View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_223 (Length: 249)
Name: NF6866A_low_223
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_223 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 9 - 248
Target Start/End: Original strand, 9370249 - 9370488
Alignment:
| Q |
9 |
gagatgaatgggtcgaagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgacgaattagggtttttccatgttgtggtg |
108 |
Q |
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| T |
9370249 |
gagatgactgggttgaagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgacgaattagggtttttccatgttgtggtg |
9370348 |
T |
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| Q |
109 |
gcttgacaaggacgagagtgcgtttggagaggtaatagaatgttgagttggtattgttgagggaatcaatgatttctttttctgaggaatggtagtcttc |
208 |
Q |
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| T |
9370349 |
gcttgacaaggacgagagtgcgtttggagaggtaacataatggtgagttggtattgttgagggaatcaatgatttctttttctgaggaatggtagtttcc |
9370448 |
T |
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| Q |
209 |
ggaatcatgtacgagtgggaatttgataggtgaaatttga |
248 |
Q |
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| T |
9370449 |
ggaatcatatacgagtgggaatttgatgggtgaagtttga |
9370488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 9348595 - 9348835
Alignment:
| Q |
9 |
gagatgaatgggtcgaagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgacgaattagggtttttccatgttgtggtg |
108 |
Q |
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| T |
9348595 |
gagatgaatgggtcgaagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgatgaattggggtttttccatgttgtggtg |
9348694 |
T |
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| Q |
109 |
gcttgacaaggacgagagtgcgtttggagaggtaatagaatgttgagttggtattgttgagggaatcaatgatttctttttctgaggaatggtagtcttc |
208 |
Q |
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| T |
9348695 |
gcctgacaaggacgagagtgcgtttggagaggtaatagaatgttgagttggtattgttgagggaatcaatgatttctttttctgagagatggtagtttct |
9348794 |
T |
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| Q |
209 |
ggaatcatgtacgagtgggaatttgataggtgaaatttgac |
249 |
Q |
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| T |
9348795 |
ggaatcatgtacgagtgggaataggatgggtgaagtttgac |
9348835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 9341314 - 9341396
Alignment:
| Q |
11 |
gatgaatgggtcgaagaatttagtttttccatgtgagttttgtgtaactctaatcaaccaaggacgacgacgaattagggttt |
93 |
Q |
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| T |
9341314 |
gatgagtgggtgaaagagtttggttttgccatgtgagttttgagtaaatctaatcaaccaaggacgacgaggaattagggttt |
9341396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 9407962 - 9408006
Alignment:
| Q |
33 |
gtttttccatgtgagttttgtgtaactctaatcaaccaaggacga |
77 |
Q |
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| T |
9407962 |
gttttgccatgtgagttttgggtaactctaatcaaccaaggacga |
9408006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 9426170 - 9426213
Alignment:
| Q |
34 |
tttttccatgtgagttttgtgtaactctaatcaaccaaggacga |
77 |
Q |
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| T |
9426170 |
ttttgccatgtgagttttgggtaactctaatcaaccaaggacga |
9426213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 9441300 - 9441257
Alignment:
| Q |
34 |
tttttccatgtgagttttgtgtaactctaatcaaccaaggacga |
77 |
Q |
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| T |
9441300 |
ttttgccatgtgagttttgggtaactctaatcaaccaaggacga |
9441257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 9417167 - 9417210
Alignment:
| Q |
34 |
tttttccatgtgagttttgtgtaactctaatcaaccaaggacga |
77 |
Q |
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| T |
9417167 |
ttttgccatgtgagttttgggtaactctgatcaaccaaggacga |
9417210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 9353538 - 9353587
Alignment:
| Q |
44 |
tgagttttgtgtaactctaatcaaccaaggacgacgacgaattagggttt |
93 |
Q |
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| T |
9353538 |
tgagttttgggtaattcgtatcaaccaaggccgacgacgaattagggttt |
9353587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 250861 - 250825
Alignment:
| Q |
44 |
tgagttttgtgtaactctaatcaaccaaggacgacga |
80 |
Q |
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| T |
250861 |
tgagttttgtgtaattctaaacaaccaaggacgacga |
250825 |
T |
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