View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_227 (Length: 249)
Name: NF6866A_low_227
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_227 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 4 - 249
Target Start/End: Complemental strand, 6640172 - 6639919
Alignment:
| Q |
4 |
atcaaagaacataacattatgtgtgtgagatttatttcccttccaattttatcctttatttatatttatatataaagaagataccaaattttagtataac |
103 |
Q |
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| T |
6640172 |
atcaaagaacataacattatgtgtgtgagatttatttcccttccaattttatgctttatttatatttatatataaagaagataccaaattttagtataac |
6640073 |
T |
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| Q |
104 |
tctggatgagtatg--------gttaattatttccacttgaagatcgattctagtattgagttaaaagcttaactgaaatttttgaattaggatgttcca |
195 |
Q |
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| T |
6640072 |
tctggatgagtatgacaaaatggttaattatttccacttgaagatcgattctagtattgagttaaaagcttaactgaaaattttgaattaggatgttcca |
6639973 |
T |
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| Q |
196 |
aaagtgctaatttgaccaaaaccgaagaaaataatattccatccattttatctt |
249 |
Q |
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| T |
6639972 |
aaagtgctaatttgaccaaaaccgaagaaaataatattccatccattttatctt |
6639919 |
T |
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