View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6866A_low_231 (Length: 249)
Name: NF6866A_low_231
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_231 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 105 - 248
Target Start/End: Original strand, 13502632 - 13502775
Alignment:
| Q |
105 |
gagatctagaaactcataaaagaatttaggggtaggaatacgccacaaacaccaatgttcttgaaagtggtgatcgaacctgactgccaacatggtaaca |
204 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13502632 |
gagatctagaaactaataaaagaatttaggggtaggaacacgccacaaacaccaatgttcttgaaagtggtgatcgaacctgactgccaacatggtaaca |
13502731 |
T |
|
| Q |
205 |
aatccacacatcaacaactcattgcattgaaacactttgacatc |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13502732 |
aatccacacatcaacaactcattgcattgaaacactttggcatc |
13502775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 13502573 - 13502617
Alignment:
| Q |
13 |
atcaaagcaagctaaagtcagtcacaaggaccgagacatatattc |
57 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
13502573 |
atcaaagcaatctaaagtcagtcacaaggaccgagacatatattc |
13502617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University