View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_235 (Length: 248)
Name: NF6866A_low_235
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_235 |
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Alignment Details
Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 55 - 232
Target Start/End: Complemental strand, 53388425 - 53388248
Alignment:
| Q |
55 |
attacaggactataatcttcgttgattaatccatttggtagcattgtagtctttgctctctcacttgatgcagaatcaacatgcgaccgagattcacttc |
154 |
Q |
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| T |
53388425 |
attacaggactacaatcctcattgattaatccatctggtagcattgtaggctttgttctctcacttgacgtagaatcaacatgcgaccgagattcacttc |
53388326 |
T |
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| Q |
155 |
caccatcatcatccttcatacagaaatattccttgggacttccattaccagtaccttcagatgaatctttttctgatg |
232 |
Q |
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| T |
53388325 |
caccgtcatcatccttcatacataattgttccttgggacttccctcactaataccttcagatgaatctttttctgatg |
53388248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 105 - 232
Target Start/End: Complemental strand, 10597664 - 10597537
Alignment:
| Q |
105 |
ctttgctctctcacttgatgcagaatcaacatgcgaccgagattcacttccaccatcatcatccttcatacagaaatattccttgggacttccattacca |
204 |
Q |
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| T |
10597664 |
ctttgttctctcacttgatgcagaatcaacatgcgaccgagattcacttctaccatcatcatccttcatacagaactgttccttgggacttccatcacta |
10597565 |
T |
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| Q |
205 |
gtaccttcagatgaatctttttctgatg |
232 |
Q |
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| T |
10597564 |
gtaccttcagatgaatctttttctgatg |
10597537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 5 - 139
Target Start/End: Complemental strand, 10597800 - 10597666
Alignment:
| Q |
5 |
aatccgttttgtcagaaaaattacttgtggaatccaatgcatcagcagcaattacaggactataatcttcgttgattaatccatttggtagcattgtagt |
104 |
Q |
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| T |
10597800 |
aatccgttttgtcaacaagatcacttgtggaatccgatgcatcagcagccattacaggactgctatcctcattgattaatccatttggtagcattgtggt |
10597701 |
T |
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| Q |
105 |
ctttgctctctcacttgatgcagaatcaacatgcg |
139 |
Q |
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| T |
10597700 |
ctttgttctctcacttaatgcagaatcaacatgcg |
10597666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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