View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_239 (Length: 247)
Name: NF6866A_low_239
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_239 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 25 - 230
Target Start/End: Original strand, 34444044 - 34444249
Alignment:
| Q |
25 |
ttatctccgcgttggaacttagaccagttgatagttctatttataaaactgagttcggtgattctgcttcattgttacttttcaaaagatgggacattgg |
124 |
Q |
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| T |
34444044 |
ttatctccgcgttggaacttagaccagttgatagttctatttataaaactgagttcggtgattctgcttcattgttacttttcaaaagatgggacattgg |
34444143 |
T |
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| Q |
125 |
ttcatttaatggaagtggtagatatcaagacgatgtttacgatagaatttggtttcctttgaattcctcttcatggaaatctataaacacttcttcaaaa |
224 |
Q |
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| T |
34444144 |
ttcatttaatggaagtggtagatatcaagacgatgtttacgatagaatttggtttcctttgaattcctcttcatggaaatctataaacacttcttcaaaa |
34444243 |
T |
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| Q |
225 |
attgat |
230 |
Q |
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|||||| |
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| T |
34444244 |
attgat |
34444249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 25 - 226
Target Start/End: Original strand, 34437297 - 34437498
Alignment:
| Q |
25 |
ttatctccgcgttggaacttagaccagttgatagttctatttataaaactgagttcggtgattctgcttcattgttacttttcaaaagatgggacattgg |
124 |
Q |
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||||||| || ||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34437297 |
ttatctcagcattggaacttagaccaattgataactctatttataaaactgagtttggtgattctgcttcattgttacttttcaaaagatgggacattgg |
34437396 |
T |
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| Q |
125 |
ttcatttaatggaagtggtagatatcaagacgatgtttacgatagaatttggtttcctttgaattcctcttcatggaaatctataaacacttcttcaaaa |
224 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| | || |||||||||||||||||||||| ||||||||||||| |
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| T |
34437397 |
ttcatttaatggaagtggtagatatcaagatgatgtttatgatagaatttggtttcctcttaaatcctcttcatggaaatctataagcacttcttcaaaa |
34437496 |
T |
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| Q |
225 |
at |
226 |
Q |
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|| |
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| T |
34437497 |
at |
34437498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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