View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_242 (Length: 247)
Name: NF6866A_low_242
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_242 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 22 - 247
Target Start/End: Original strand, 41311027 - 41311252
Alignment:
| Q |
22 |
attgtgtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtag |
121 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311027 |
attgcgtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtag |
41311126 |
T |
|
| Q |
122 |
agtaatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcata |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311127 |
agtaatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcata |
41311226 |
T |
|
| Q |
222 |
aatcagccaatgaatagaaccattca |
247 |
Q |
| |
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|| ||||||||||||||||||||||| |
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| T |
41311227 |
aaccagccaatgaatagaaccattca |
41311252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 27 - 247
Target Start/End: Original strand, 43164710 - 43164930
Alignment:
| Q |
27 |
gtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtagagtaa |
126 |
Q |
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|||||||||||| ||||||||||||||||||| |||||||||||||||||| || ||||||| || || ||||| ||||||||||| | | ||| || |
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| T |
43164710 |
gtattcttgcattacccatatcttaagtgtagacatctccatattccatacgctgataagtccgcgaagtaccaacaaatcataaaggttgggagaaaaa |
43164809 |
T |
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| Q |
127 |
tcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatca |
226 |
Q |
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|||||||||||| ||||||| |||||| ||||||||| |||| |||||||||||||| |||||||||||||||| |||||||||| || || ||||| || |
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| T |
43164810 |
tcactataaaaatcatctggaagagcaatctctgacattgtcttttcctttaaatcataggcaataataacatctatttcagtctcataattataaacca |
43164909 |
T |
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| Q |
227 |
gccaatgaatagaaccattca |
247 |
Q |
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||||||||||||||||||||| |
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| T |
43164910 |
gccaatgaatagaaccattca |
43164930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 27 - 245
Target Start/End: Complemental strand, 30165883 - 30165677
Alignment:
| Q |
27 |
gtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtagagtaa |
126 |
Q |
| |
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|||||||||||||||||||||||||| ||||| | |||||| |||||||||||| ||||||| |||||||| |||||||||||||| |
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| T |
30165883 |
gtattcttgcatcacccatatcttaactgtagacctctccacattccatacactgataagtccatgaaataccaacaaatcataaattc----------- |
30165795 |
T |
|
| Q |
127 |
tcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatca |
226 |
Q |
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||| | || || ||| ||| ||||| |||||| || |||| ||||||||||||||||||||||||||||||||||||||||| || || ||||| || |
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| T |
30165794 |
-cacgagaacaatcatttggaagagctatctctgccattgtcgcttcctttaaatcaaaggcaataataacatccatttcagtctgataattataaacca |
30165696 |
T |
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| Q |
227 |
gccaatgaatagaaccatt |
245 |
Q |
| |
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||||||||||||||||||| |
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| T |
30165695 |
gccaatgaatagaaccatt |
30165677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 125 - 240
Target Start/End: Original strand, 28180965 - 28181080
Alignment:
| Q |
125 |
aatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaat |
224 |
Q |
| |
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|||| ||||||||| ||||||| ||||| | ||||||| |||||||||||||||||||||||||||||||||| | |||| |||| || || ||||| |
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| T |
28180965 |
aatccctataaaaatcatctggaagagctatatctgacattgtcatttcctttaaatcaaaggcaataataacaccaattttggtctcataattataaac |
28181064 |
T |
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| Q |
225 |
cagccaatgaatagaa |
240 |
Q |
| |
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|||||||||||||||| |
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| T |
28181065 |
cagccaatgaatagaa |
28181080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 247
Target Start/End: Original strand, 30124981 - 30125206
Alignment:
| Q |
22 |
attgtgtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtag |
121 |
Q |
| |
|
|||| |||||| |||||||||| |||||||| || | |||||| | | |||||| ||| ||||||| |||||||| | |||||||||| | || || |
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| T |
30124981 |
attgcgtattcatgcatcacccgtatcttaactgcatccatctcaagaatccataaactgataagtccaccaaatactaacaaatcataatctacaggag |
30125080 |
T |
|
| Q |
122 |
agtaatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcata |
221 |
Q |
| |
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||||||| |||||||| ||| ||| ||||| | ||||||| |||| |||||||||||||||||||| |||||||||| | | |||| || || || |
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| T |
30125081 |
agtaatcggtataaaaatcatttggaagagctatttctgacattgtcgcttcctttaaatcaaaggcaacaataacatccttgttggtctcatgattatg |
30125180 |
T |
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| Q |
222 |
aatcagccaatgaatagaaccattca |
247 |
Q |
| |
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|| |||||||||||||| ||||||| |
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| T |
30125181 |
aaccagccaatgaatagtcccattca |
30125206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 247
Target Start/End: Original strand, 30131068 - 30131160
Alignment:
| Q |
155 |
tctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatcagccaatgaatagaaccattca |
247 |
Q |
| |
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||||||||| ||||||||||||||||| |||||| |||||||||||| || |||| || || ||||| |||||||||||||| ||||||| |
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| T |
30131068 |
tctctgacattgtcatttcctttaaattaaaggctataataacatcccttcttgtctcataattataaaccagccaatgaatagccccattca |
30131160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 30120068 - 30120112
Alignment:
| Q |
155 |
tctctgacagtgtcatttcctttaaatcaaaggcaataataacat |
199 |
Q |
| |
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||||||| | |||| |||||||||||||||||||||||||||||| |
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| T |
30120068 |
tctctgatattgtcgtttcctttaaatcaaaggcaataataacat |
30120112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 30130934 - 30130967
Alignment:
| Q |
24 |
tgtgtattcttgcatcacccatatcttaagtgta |
57 |
Q |
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||||||||||||||||||||||||||||| |||| |
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| T |
30130934 |
tgtgtattcttgcatcacccatatcttaactgta |
30130967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 21426703 - 21426642
Alignment:
| Q |
140 |
catctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatcc |
201 |
Q |
| |
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||||||| ||||| ||||||||| ||| ||||||||||||||| |||||||||||||||| |
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| T |
21426703 |
catctggaagagctatctctgacattgttgtttcctttaaatcaagggcaataataacatcc |
21426642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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