View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_258 (Length: 244)
Name: NF6866A_low_258
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_258 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 4302092 - 4301854
Alignment:
| Q |
1 |
atagtagcaaacgagctcacgtgccgctgggtaatcaatggattcgaacactgttttggcagctaggaacatgatgaattctgaaaattggtttgaaaga |
100 |
Q |
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| T |
4302092 |
atagttgcaaacgaactcacttgccgctgggtaatcaatggattcgaacactgttttggcagctaggaacatgatgaattctgaaaattggtttgaaaga |
4301993 |
T |
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| Q |
101 |
actgaaaacacatttcctttgtcttctgcattactgctgatgtgtccccccactatataaacctcatcagttacaaatttcaagggttgtgttttatcaa |
200 |
Q |
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| T |
4301992 |
actgaaaacacatttcctttgtcttctgcattactgctgatgtgtccccccactatataaacctcatcagttacaaatttcaagggttgtgttttatcaa |
4301893 |
T |
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| Q |
201 |
ttcctcttttctcaaatacaatcccaagtgcaacaccat |
239 |
Q |
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| T |
4301892 |
ttcctcttttctcaaatacaatcccaagtgcaataccat |
4301854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 63 - 155
Target Start/End: Original strand, 49112454 - 49112546
Alignment:
| Q |
63 |
ctaggaacatgatgaattctgaaaattggtttgaaagaactgaaaacacatttcctttgtcttctgcattactgctgatgtgtccccccacta |
155 |
Q |
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| T |
49112454 |
ctaggaacatgttgaattctgcatattggttagaaggaactgaaaacacatttcctttgtcttctgcattactgctgatgtgcccccccacta |
49112546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 63 - 165
Target Start/End: Original strand, 49100660 - 49100762
Alignment:
| Q |
63 |
ctaggaacatgatgaattctgaaaattggtttgaaagaactgaaaacacatttcctttgtcttctgcattactgctgatgtgtccccccactatataaac |
162 |
Q |
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| T |
49100660 |
ctaggaacatgttgaattctgcatattggtttgaagggactgaaaaaacatttcctttgtcttctgtattcctgctgatgtgtcctcccactacataaac |
49100759 |
T |
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| Q |
163 |
ctc |
165 |
Q |
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||| |
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| T |
49100760 |
ctc |
49100762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 5085423 - 5085365
Alignment:
| Q |
162 |
cctcatcagttacaaatttcaagggttgtgttttatcaattcctcttttctcaaataca |
220 |
Q |
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| T |
5085423 |
cctcatcagttacaaatttcaagggttgtgtttcatcaattcctcttttctcgaataca |
5085365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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