View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_262 (Length: 243)
Name: NF6866A_low_262
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_262 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 25870533 - 25870309
Alignment:
| Q |
19 |
cattgtagtcttcaaaatcttcattgttatagattgggtgttagcaagcggttgagtctcaaatcacctaaagacatagcctaagtaatgctcatttggc |
118 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25870533 |
cattgtagtcttcaaaatcttcattgttattgattgggtgttagctagcggttgagtctcaaatcacctaaagacatagcctaagtaatgctcatttggc |
25870434 |
T |
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| Q |
119 |
tttcacctttcaattcgattttgtgggattaagttatattccaggtcgcatatctaagatggtgtaaatgaatatcatagatcttttgttggatcaccca |
218 |
Q |
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|||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25870433 |
tttcgcctttcaattcaattttgtggggttaagttatattccaggtcgcatatctaagatggtgtaaatgaatatcatagatcttttgttggatcaccca |
25870334 |
T |
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| Q |
219 |
cacattacaagatctaggtgcaaag |
243 |
Q |
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|||||||||||||||||||| |||| |
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| T |
25870333 |
cacattacaagatctaggtgtaaag |
25870309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 25853469 - 25853245
Alignment:
| Q |
19 |
cattgtagtcttcaaaatcttcattgttatagattgggtgttagcaagcggttgagtctcaaatcacctaaagacatagcctaagtaatgctcatttggc |
118 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||||| || | |||||||||||||| ||||||||||||||||| |||||| ||||||||| |
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| T |
25853469 |
cattgtactcttcaaaatcttcattgttttagattgggtgttagctagggattgagtctcaaatcgcctaaagacatagcctaggtaatgttcatttggc |
25853370 |
T |
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| Q |
119 |
tttcacctttcaattcgattttgtgggattaagttatattccaggtcgcatatctaagatggtgtaaatgaatatcatagatcttttgttggatcaccca |
218 |
Q |
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|||| |||||||||| |||||||||| || |||||||||||||||| |||||||||||| | |||||| ||||||||||||||||||||||| |||| |
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| T |
25853369 |
tttctcctttcaattaaattttgtggggttgagttatattccaggtcccatatctaagatactataaatgcttatcatagatcttttgttggatcgccca |
25853270 |
T |
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| Q |
219 |
cacattacaagatctaggtgcaaag |
243 |
Q |
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|| || |||| ||||||||||||| |
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| T |
25853269 |
aaccttccaagctctaggtgcaaag |
25853245 |
T |
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