View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6866A_low_264 (Length: 243)
Name: NF6866A_low_264
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_264 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 29222619 - 29222829
Alignment:
| Q |
18 |
attctcaaacaaaaaactatgagctaaaaacgactagccaagtaagctctcaactccaaaactccattaaaacaccaagcca-------aggagatatgt |
110 |
Q |
| |
|
||||||||||||||||| | |||||||||| | |||||||||||||||| ||||||||||||| | |||| |||||||||| ||||||||||| |
|
|
| T |
29222619 |
attctcaaacaaaaaacaacgagctaaaaatggctagccaagtaagctcccaactccaaaactttaataaa-caccaagccattttagaaggagatatgt |
29222717 |
T |
|
| Q |
111 |
aatttgatcaatggtttttaaaataatttaaaggacaaccaaatacaaagaaatggttg-tacaaatataatttctcttctaaaaagatagagatagcta |
209 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||||| | |||| || |||| |||| |||||||||||||||||| | ||||||||| |
|
|
| T |
29222718 |
tatttgatcaatcatttttaaaataatttaaaggacaactaaatacatacaaataaatgatacatatatcatttctcttctaaaaagacaaagatagcta |
29222817 |
T |
|
| Q |
210 |
gaacaaactacc |
221 |
Q |
| |
|
||||||||||| |
|
|
| T |
29222818 |
aaacaaactacc |
29222829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 29226702 - 29226774
Alignment:
| Q |
149 |
ccaaatacaaagaaatggttgtacaaatataatttctcttctaaaaagatagagatagctagaacaaactacc |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
29226702 |
ccaaatacaaagaaatggttgtacaaatatgatttctcttctaaaaagacagagatagctagaacaaactacc |
29226774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 195
Target Start/End: Original strand, 305018 - 305052
Alignment:
| Q |
161 |
aaatggttgtacaaatataatttctcttctaaaaa |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |
|
|
| T |
305018 |
aaatggttgtacaaatataatttctcttctcaaaa |
305052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University