View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_268 (Length: 243)
Name: NF6866A_low_268
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_268 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0703 (1 HSPs) |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 54423862 - 54423639
Alignment:
| Q |
20 |
ctaaggtcctggtcaatcgtcttcgtccacttattaacaaatgaattttccaagaacaggcagcctttgtgcattctcgctcaatcatggataatgcgct |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54423862 |
ctaaggtcctggtcaatcgtcttcgtccacttattaacaaatggatttcccaagaacaggcagcctttgtgcattctcgctcaatcatggataatgcgct |
54423763 |
T |
|
| Q |
120 |
agcagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgta |
219 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54423762 |
aacagcattcgaagttcttcatcatatgcgctgcaaaacaaaagaaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgta |
54423663 |
T |
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| Q |
220 |
aagtggtcgtacctcaaagctatt |
243 |
Q |
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|| ||||||||||||||||||||| |
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| T |
54423662 |
aattggtcgtacctcaaagctatt |
54423639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 84 - 237
Target Start/End: Original strand, 20127319 - 20127472
Alignment:
| Q |
84 |
ctttgtgcattctcgctcaatcatggataatgcgctagcagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgaggtggct |
183 |
Q |
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||||||||||||||||||||||||||||||||||||| | || || ||||| || |||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
20127319 |
ctttgtgcattctcgctcaatcatggataatgcgctaaccgcttttgaagtcctccatcatatgcgctgcaaaacaaaagggaaaataggcgaggtggca |
20127418 |
T |
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| Q |
184 |
ctcaaacttgacatatccaaggcattcgatagtgtaaagtggtcgtacctcaaa |
237 |
Q |
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|| |||||||| |||||||||||||| |||||||||| ||| | ||||||||| |
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| T |
20127419 |
ctaaaacttgatatatccaaggcatttgatagtgtaagttggccttacctcaaa |
20127472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 73 - 243
Target Start/End: Complemental strand, 27645764 - 27645594
Alignment:
| Q |
73 |
gaacaggcagcctttgtgcattctcgctcaatcatggataatgcgctagcagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaatag |
172 |
Q |
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||||||||||| || || || || ||||| |||||||||||||| || | || || ||| | | |||||||||||||||||||| ||||| ||||| | |
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| T |
27645764 |
gaacaggcagcattcgttcactcccgctctatcatggataatgctttaacggcctttgaaatcttacatcatatgcgctgcaaaaccaaaggtaaaattg |
27645665 |
T |
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| Q |
173 |
gtgaggtggctctcaaacttgacatatccaaggcattcgatagtgtaaagtggtcgtacctcaaagctatt |
243 |
Q |
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||||||||||||| |||||||| || || ||||| || |||||||| | |||| |||||| ||||||||| |
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| T |
27645664 |
gtgaggtggctctgaaacttgatatctctaaggcttttgatagtgttagctggttgtaccttaaagctatt |
27645594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 12461121 - 12461045
Alignment:
| Q |
142 |
catatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgt |
218 |
Q |
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| T |
12461121 |
catatgcgttgtaaatcaaaaggaaaaaaaggtgaggttgctttgaaacttgatatatccaaagcatttgacagtgt |
12461045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 20120986 - 20121056
Alignment:
| Q |
20 |
ctaaggtcctggtcaatcgtcttcgtccacttattaacaaatgaattttccaagaacaggcagcctttgtg |
90 |
Q |
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| T |
20120986 |
ctaaggtccttgccaatcgtctccatccattaatcaacaaatggatttcccaagaacaagcagcctttgtg |
20121056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 155
Target Start/End: Complemental strand, 13190709 - 13190645
Alignment:
| Q |
91 |
cattctcgctcaatcatggataatgcgctagcagcattcgaagttcttcatcatatgcgctgcaa |
155 |
Q |
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|||||||| || |||||||||||||| || ||||||| ||| ||||||| |||||||| ||||| |
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| T |
13190709 |
cattctcgttccatcatggataatgctttaacagcatttgaaattcttcaccatatgcggtgcaa |
13190645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 79 - 218
Target Start/End: Complemental strand, 9183133 - 9182994
Alignment:
| Q |
79 |
gcagcctttgtgcattctcgctcaatcatggataatgcgctagcagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgagg |
178 |
Q |
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||||| ||||||| |||||| || || |||||||| ||||| |||| || ||| |||| ||| ||||||||||||| | ||||||||| |||||| | |
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| T |
9183133 |
gcagcgtttgtgccttctcgttcgataatggataacgcgctcacagcctttgaaattctacattatatgcgctgcaagaataaaggaaaacaaggtgatg |
9183034 |
T |
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| Q |
179 |
tggctctcaaacttgacatatccaaggcattcgatagtgt |
218 |
Q |
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| ||||| ||||||||||| || ||||| || |||||||| |
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| T |
9183033 |
tagctctaaaacttgacatttcgaaggcttttgatagtgt |
9182994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 79 - 218
Target Start/End: Original strand, 11625140 - 11625279
Alignment:
| Q |
79 |
gcagcctttgtgcattctcgctcaatcatggataatgcgctagcagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgagg |
178 |
Q |
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||||| ||||||| |||||| || || |||||||| ||||| |||| || ||| | || ||| ||||||||||||| | |||||||||| |||||| | |
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| T |
11625140 |
gcagcgtttgtgccttctcgttcgataatggataacgcgctcacagcctttgaaatactacattatatgcgctgcaagaataaaggaaaaaaaggtgatg |
11625239 |
T |
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| Q |
179 |
tggctctcaaacttgacatatccaaggcattcgatagtgt |
218 |
Q |
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| ||||| ||||||||||| || ||||| || |||||||| |
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| T |
11625240 |
tagctctaaaacttgacatttcgaaggcttttgatagtgt |
11625279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 79 - 218
Target Start/End: Complemental strand, 10161356 - 10161217
Alignment:
| Q |
79 |
gcagcctttgtgcattctcgctcaatcatggataatgcgctagcagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgagg |
178 |
Q |
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||||| ||||||| |||||| || || |||||||| ||||| |||| || ||| |||| ||| ||||||||||||| | ||||||||| |||||| | |
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| T |
10161356 |
gcagcgtttgtgccttctcgttcgataatggataacgcgctcacagcctttgaaattctacattatatgcgctgcaagaataaaggaaaacaaggtgatg |
10161257 |
T |
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| Q |
179 |
tggctctcaaacttgacatatccaaggcattcgatagtgt |
218 |
Q |
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| ||||| ||||||||||| || ||||| || |||||||| |
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| T |
10161256 |
tagctctaaaacttgacatttcgaaggcttttgatagtgt |
10161217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 218
Target Start/End: Original strand, 16860983 - 16861059
Alignment:
| Q |
142 |
catatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgt |
218 |
Q |
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|||||||| || ||| |||||||||||| ||||||||| ||| | ||||||||||||||||| ||||| || ||||| |
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| T |
16860983 |
catatgcgttgtaaatcaaaaggaaaaaaaggtgaggttgctttgaaacttgacatatccaaagcatttgacagtgt |
16861059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0703 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0703
Description:
Target: scaffold0703; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 2013 - 1937
Alignment:
| Q |
142 |
catatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgt |
218 |
Q |
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|||||||| || ||| |||||||||||| ||||||||| ||| | |||||||| |||||||| ||||| || ||||| |
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| T |
2013 |
catatgcgttgtaaatcaaaaggaaaaaaaggtgaggttgctttgaaacttgatatatccaaagcatttgacagtgt |
1937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 206
Target Start/End: Complemental strand, 239092 - 238965
Alignment:
| Q |
79 |
gcagcctttgtgcattctcgctcaatcatggataatgcgctagcagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgagg |
178 |
Q |
| |
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||||||||||| | ||| | || |||||||||||||| ||| |||| || ||| ||||||| |||||| ||||| | |||||| ||||| || |||| |
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| T |
239092 |
gcagcctttgttccatctagatccatcatggataatgctctatcagcctttgaaattcttcactttatgcgatgcaagaaaaaaggtaaaattggcgagg |
238993 |
T |
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| Q |
179 |
tggctctcaaacttgacatatccaaggc |
206 |
Q |
| |
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||||| | || ||||| ||||||||||| |
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| T |
238992 |
tggctttaaagcttgatatatccaaggc |
238965 |
T |
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