View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6866A_low_27 (Length: 435)

Name: NF6866A_low_27
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6866A_low_27
NF6866A_low_27
[»] chr3 (30 HSPs)
chr3 (1-430)||(41985420-41985852)
chr3 (77-428)||(41980722-41981073)
chr3 (172-311)||(9494822-9494961)
chr3 (167-325)||(9407324-9407482)
chr3 (162-322)||(9425526-9425686)
chr3 (187-325)||(9343823-9343961)
chr3 (209-430)||(9448314-9448535)
chr3 (177-325)||(9329804-9329952)
chr3 (169-325)||(9617463-9617619)
chr3 (177-325)||(9336508-9336656)
chr3 (167-325)||(9397743-9397903)
chr3 (190-322)||(9655360-9655492)
chr3 (177-325)||(9695616-9695764)
chr3 (190-322)||(9646367-9646499)
chr3 (179-311)||(9352871-9353003)
chr3 (165-325)||(9432852-9433012)
chr3 (170-325)||(9416534-9416689)
chr3 (217-310)||(9340679-9340772)
chr3 (179-272)||(9377056-9377149)
chr3 (174-269)||(9614009-9614104)
chr3 (179-317)||(9626488-9626626)
chr3 (156-325)||(9485969-9486138)
chr3 (179-310)||(9347957-9348088)
chr3 (179-310)||(9369611-9369742)
chr3 (210-331)||(9756381-9756502)
chr3 (191-291)||(9441815-9441915)
chr3 (277-325)||(9686751-9686799)
chr3 (77-130)||(9695838-9695891)
chr3 (210-239)||(16011768-16011797)
chr3 (85-133)||(16011844-16011892)
[»] chr8 (3 HSPs)
chr8 (82-430)||(44688680-44689028)
chr8 (265-430)||(13170579-13170744)
chr8 (9-201)||(13170762-13170954)
[»] chr1 (8 HSPs)
chr1 (118-430)||(18991113-18991422)
chr1 (169-320)||(4428591-4428742)
chr1 (169-276)||(4439820-4439927)
chr1 (191-307)||(235195-235311)
chr1 (187-302)||(8814385-8814500)
chr1 (183-300)||(246841-246958)
chr1 (187-307)||(251412-251532)
chr1 (217-302)||(231589-231674)
[»] chr2 (1 HSPs)
chr2 (179-322)||(20694304-20694447)
[»] chr6 (7 HSPs)
chr6 (177-325)||(7041464-7041612)
chr6 (171-307)||(7046801-7046937)
chr6 (179-307)||(7025720-7025854)
chr6 (179-307)||(7012784-7012918)
chr6 (246-307)||(7029850-7029911)
chr6 (180-305)||(9159515-9159646)
chr6 (180-307)||(9170782-9170915)
[»] chr7 (3 HSPs)
chr7 (180-312)||(3695661-3695792)
chr7 (217-325)||(450111-450219)
chr7 (85-133)||(450315-450363)
[»] chr5 (2 HSPs)
chr5 (187-311)||(18571086-18571213)
chr5 (180-307)||(33541623-33541750)


Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 41985420 - 41985852
Alignment:
Q  1 agaaaacatactctttttatcttttcatgattgaaacttttggcgatcccttacggagatggccaaaaagatgtggagtactcaggataatcagccaaag 100  Q
    |||||||||||||||||||||||||||||| || | |||||| |||||| || ||||| ||||||||| || |||||||||||||||||||||| |||||    
T  41985420 agaaaacatactctttttatcttttcatgaatgcagcttttgacgatccattccggaggtggccaaaacgaggtggagtactcaggataatcagacaaag 41985519  T
Q  101 gggaaacccggcattgatccaagtgaaaaacacacatcccacaaagcatctggtcaaaatcgttgaatgcatcatcactaaagatgacacaatttccttt 200  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41985520 gggaaacccaacattgatccaagtgaaaaacacacatcccacaaagcatctggtcaaaatcgtagaatgcatcatcactaaagatgacacaatttccttt 41985619  T
Q  201 gccaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcc 300  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41985620 gacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcc 41985719  T
Q  301 ttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaac---tcacgct 397  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||   |||| ||    
T  41985720 ttctcatcaagtctgaacacatcaagctttaaaccatcttcaccggggaaaccaaaacaatgagagtcatatatgtctactagcaacaactgatcaccct 41985819  T
Q  398 cactctctaccaggaatttcatgtcccctccat 430  Q
    |||||||||||||||||||||||||||||||||    
T  41985820 cactctctaccaggaatttcatgtcccctccat 41985852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 77 - 428
Target Start/End: Original strand, 41980722 - 41981073
Alignment:
Q  77 agtactcaggataatcagccaaaggggaaacccggcattgatccaagtgaaaaacacacatcccacaaagcatctggtcaaaatcgttgaatgcatcatc 176  Q
    |||| ||||||||||| | |||||||||||| || | ||||||||||||||||| |||||||||||| ||||| | || ||||  |  |||||||||| |    
T  41980722 agtattcaggataatcggacaaaggggaaacacgaccttgatccaagtgaaaaatacacatcccacatagcattttgttaaaagggaggaatgcatcacc 41980821  T
Q  177 actaaagatgacacaatttcctttgccaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactc 276  Q
    |  |||||| | ||||||||||||| ||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  41980822 aacaaagataatacaatttcctttgacaacagacaaatttgaagcagaagcaaaaaacgaacatccattccccaagaacaaaactctatcccctaaactc 41980921  T
Q  277 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgt 376  Q
    | ||||||||||||||||||||| |||| | |||| || ||||||||||| || |||||||||||||||||||| |||| ||||||||||| ||| ||||    
T  41980922 gtcaacttgacccatttcttctctttcttagcaagcctaaacacatcaagattgaaaccatcttcaccagggaacccaacacaatgagagtgataaatgt 41981021  T
Q  377 ctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctcc 428  Q
    | |||||||| || |||| |||||||||||||||||||||||  ||||||||    
T  41981022 ccactagcaataattcaccctcactctctaccaggaatttcacatcccctcc 41981073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 172 - 311
Target Start/End: Complemental strand, 9494961 - 9494822
Alignment:
Q  172 tcatcactaaagatgacacaatttcctttgccaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatccccta 271  Q
    |||||| |||||||||||||||| ||||||  |||  ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9494961 tcatcaataaagatgacacaattccctttggaaacgcacaaatcagaagcagaagcagaaaacgaacatccattccccaagaacaaaaccctatccccta 9494862  T
Q  272 aactcgccaacttgacccatttcttctccttctcatcaag 311  Q
    |||||  ||| || |||||| || ||||||||||||||||    
T  9494861 aactcatcaaattcacccatctcatctccttctcatcaag 9494822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 167 - 325
Target Start/End: Original strand, 9407324 - 9407482
Alignment:
Q  167 atgcatcatcactaaagatgacacaatttcctttgccaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatc 266  Q
    ||||||||||| |||||| ||||||||| |||||| ||||| ||||||||||||| ||||||||||| |||||||||||| | ||||||||||| |||||    
T  9407324 atgcatcatcaataaagaagacacaattccctttggcaacacacaaatccgaagctgaagcagaaaatgaacatccattcacaaagaacaaaaccctatc 9407423  T
Q  267 ccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 325  Q
    ||||||||||  |||||| |||||| | || | |||||| |||||||| ||||||||||    
T  9407424 ccctaaactcatcaacttcacccatcttttattcttctcgtcaagtctaaacacatcaa 9407482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 162 - 322
Target Start/End: Original strand, 9425526 - 9425686
Alignment:
Q  162 gttgaatgcatcatcactaaagatgacacaatttcctttgccaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaact 261  Q
    |||| ||||||||||  |||||||||||||||| |||||| ||||| ||||||||||||| ||||||||||| |||||||||||| | |||||||||||     
T  9425526 gttgtatgcatcatcgataaagatgacacaattccctttggcaacacacaaatccgaagctgaagcagaaaatgaacatccattcacaaagaacaaaacc 9425625  T
Q  262 ctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacat 322  Q
    |||| || |||||||  |||||| |||||||| || | |||||| |||||||| |||||||    
T  9425626 ctattccttaaactcatcaacttcacccattttttattcttctcgtcaagtctaaacacat 9425686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 187 - 325
Target Start/End: Original strand, 9343823 - 9343961
Alignment:
Q  187 acacaatttcctttgccaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttga 286  Q
    |||||||||||| |   |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| | |  ||||| |    
T  9343823 acacaatttcctctaggaacacacaaatccgaagcagaagcagaaaacgaacattcattccccaagaacaaaacactatcccctaaagttgttaacttca 9343922  T
Q  287 cccatttcttctccttctcatcaagtctgaacacatcaa 325  Q
    |||| ||||||||| ||||||||||  | ||||||||||    
T  9343923 cccacttcttctccatctcatcaagcttaaacacatcaa 9343961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 209 - 430
Target Start/End: Original strand, 9448314 - 9448535
Alignment:
Q  209 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 308  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||| | |  ||||| ||||||||||||||||||||||     
T  9448314 acaaatccgaagcagaagcagaaaacgaacagtcattccccaagaacaaaacactatcccctaaagttgttaacttcacccatttcttctccttctcata 9448413  T
Q  309 aagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactcacgctcactctctacc 408  Q
    |||  | |||||||||| | ||| | ||||   ||| |||||  | ||||||  | | ||||| ||||| ||||||||||| || | ||| || || ||     
T  9448414 aagcttaaacacatcaacccttatagcatcaggacccgggaactcgaaacaaaaacactcataaatgtccactagcaacaagtctccctctctatcaact 9448513  T
Q  409 aggaatttcatgtcccctccat 430  Q
    | |||||| |||||||||||||    
T  9448514 aagaattttatgtcccctccat 9448535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 177 - 325
Target Start/End: Original strand, 9329804 - 9329952
Alignment:
Q  177 actaaagatgacacaatttcctttgccaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactc 276  Q
    |||| ||||||||||||| || ||| ||| |  ||| || ||||||||||||||||||||| ||||||||||||||||||||||  |||| |||||| ||    
T  9329804 actatagatgacacaattcccattggcaaaacccaactcggaagcagaagcagaaaacgaatatccattccccaagaacaaaaccttatctcctaaattc 9329903  T
Q  277 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 325  Q
    ||||||||||||||  | ||||| ||||||||||| || ||||||||||    
T  9329904 gccaacttgacccaccttttctctttctcatcaagcctaaacacatcaa 9329952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 169 - 325
Target Start/End: Complemental strand, 9617619 - 9617463
Alignment:
Q  169 gcatcatcactaaagatgacacaatttcctttgccaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatccc 268  Q
    ||||| ||| |||||||||||||||| ||||||  |||| ||||||| ||||||||||||||||| |||||||||||| | | ||||||||| |||||||    
T  9617619 gcatcgtcaataaagatgacacaattccctttggaaacacacaaatctgaagcagaagcagaaaatgaacatccattcacaaggaacaaaaccctatccc 9617520  T
Q  269 ctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 325  Q
    ||||| |   |||||| |||||||||||||| ||||||| ||  |||||||| ||||    
T  9617519 ctaaatttttcaacttcacccatttcttctctttctcatgaaacctgaacacttcaa 9617463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 177 - 325
Target Start/End: Original strand, 9336508 - 9336656
Alignment:
Q  177 actaaagatgacacaatttcctttgccaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactc 276  Q
    |||| ||||||||||||| || ||| ||| |  ||| || ||||||||||||||||||||||||||||||||||||||||||||  |||| |||||| ||    
T  9336508 actatagatgacacaattcccattggcaaaacccaactcggaagcagaagcagaaaacgaacatccattccccaagaacaaaaccttatctcctaaattc 9336607  T
Q  277 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 325  Q
    | || |||||||||  | ||||| ||||||||||| || ||||||||||    
T  9336608 gtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaa 9336656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 167 - 325
Target Start/End: Original strand, 9397743 - 9397903
Alignment:
Q  167 atgcatcatcactaaagatgacacaatttcctttgccaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatc 266  Q
    ||||||||||| |||||| ||||||||| |||||| ||||| |||||||| |||| ||||| ||||| |||||||||||| | |||||||| || |||||    
T  9397743 atgcatcatcaataaagacgacacaattccctttggcaacacacaaatccaaagctgaagcggaaaatgaacatccattcacaaagaacaagaccctatc 9397842  T
Q  267 ccctaaactcgccaacttgaccca--tttcttctccttctcatcaagtctgaacacatcaa 325  Q
    ||||||||||  |||||| || ||  ||| || | |||||| |||||||| ||||||||||    
T  9397843 ccctaaactcatcaacttcacgcattttttttatacttctcgtcaagtctaaacacatcaa 9397903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 190 - 322
Target Start/End: Complemental strand, 9655492 - 9655360
Alignment:
Q  190 caatttcctttgccaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgaccc 289  Q
    ||||| ||||||  |||| ||||||||||||| || ||||||||||||||||| |  ||||| |||||||| |||||||||||| ||  |||||| ||||    
T  9655492 caattccctttggaaacacacaaatccgaagctgatgcagaaaacgaacatccttcgcccaaaaacaaaaccctatcccctaaattcatcaacttcaccc 9655393  T
Q  290 atttcttctccttctcatcaagtctgaacacat 322  Q
    |||||||||||||||||| || |||||| ||||    
T  9655392 atttcttctccttctcatgaaatctgaaaacat 9655360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 177 - 325
Target Start/End: Complemental strand, 9695764 - 9695616
Alignment:
Q  177 actaaagatgacacaatttcctttgccaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactc 276  Q
    |||| ||||||||||||| || ||  ||||| |||| || |||||||| ||||| ||||||||  | | |||||| |||||||| |||||||||||| |     
T  9695764 actatagatgacacaattcccatttgcaacacacaactctgaagcagatgcagagaacgaacagtcttcccccaaaaacaaaaccctatcccctaaattg 9695665  T
Q  277 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 325  Q
    | |||||||||||| |||||||||||||||||||| ||||| |||||||    
T  9695664 gtcaacttgacccacttcttctccttctcatcaagcctgaatacatcaa 9695616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 190 - 322
Target Start/End: Complemental strand, 9646499 - 9646367
Alignment:
Q  190 caatttcctttgccaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgaccc 289  Q
    ||||| ||||||  |||| ||||||||||||| || ||||||||||||||||| |  || || |||||||| |||||||||||| ||  |||||| ||||    
T  9646499 caattccctttggaaacacacaaatccgaagctgatgcagaaaacgaacatccttcgccaaaaaacaaaaccctatcccctaaattcatcaacttcaccc 9646400  T
Q  290 atttcttctccttctcatcaagtctgaacacat 322  Q
    |||||||||||||||||| || |||||| ||||    
T  9646399 atttcttctccttctcatgaaatctgaaaacat 9646367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 179 - 311
Target Start/End: Original strand, 9352871 - 9353003
Alignment:
Q  179 taaagatgacacaatttcctttgccaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgc 278  Q
    |||||||||||||||||||||||  || | ||| |||| || ||||||||||||||||||||||| ||||||  |||||||| ||| |||||||  |       
T  9352871 taaagatgacacaatttcctttgggaagacacagatcccaaccagaagcagaaaacgaacatccactccccacaaacaaaaccctaccccctaatttttt 9352970  T
Q  279 caacttgacccatttcttctccttctcatcaag 311  Q
    |||||| ||||| ||||||||| ||||||||||    
T  9352971 caacttcacccacttcttctccatctcatcaag 9353003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 165 - 325
Target Start/End: Original strand, 9432852 - 9433012
Alignment:
Q  165 gaatgcatcatcactaaagatgacacaatttcctttgccaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactcta 264  Q
    |||| |||||||| ||||||||| |||||| |||| |  |||| |||||||||| || ||||||||||| ||| || ||  ||| | ||||||||| |||    
T  9432852 gaatacatcatcaataaagatgatacaattcccttcggaaacacacaaatccgaggctgaagcagaaaaggaatattcaagccctatgaacaaaacccta 9432951  T
Q  265 tcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 325  Q
    || |||||| ||   | ||| ||||| ||| |||||||||||||||||||||| |||||||    
T  9432952 tctcctaaattcttgatcttcacccacttcctctccttctcatcaagtctgaaaacatcaa 9433012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 170 - 325
Target Start/End: Original strand, 9416534 - 9416689
Alignment:
Q  170 catcatcactaaagatgacacaatttcctttgccaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccc 269  Q
    |||||||| ||||||  |||||||| |||||   |||| ||| |||| | || ||||||||||| ||||||  |||| | |||||||| || ||||||||    
T  9416534 catcatcaataaagacaacacaattccctttagtaacacacatatccaaggctgaagcagaaaatgaacatttattcacgaagaacaacaccctatcccc 9416633  T
Q  270 taaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 325  Q
    |||||||| |||||| |||||||| || | |||||| ||||| | |||||||||||    
T  9416634 taaactcgtcaacttcacccattttttattcttctcgtcaagacagaacacatcaa 9416689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 217 - 310
Target Start/End: Original strand, 9340679 - 9340772
Alignment:
Q  217 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaa 310  Q
    |||||||||||||||||||||||||||  ||| | ||| ||||| |||||||| ||| ||  |||||| ||||| |||||||||||||||||||    
T  9340679 gaagcagaagcagaaaacgaacatccacgcccaatgaaaaaaaccctatccccgaaattcctcaacttcacccacttcttctccttctcatcaa 9340772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 179 - 272
Target Start/End: Original strand, 9377056 - 9377149
Alignment:
Q  179 taaagatgacacaatttcctttgccaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaa 272  Q
    |||||||||||||||||||||||  || | ||| |||| |||||||||||| ||||||||||||| ||||||  |||||||  |||||||||||    
T  9377056 taaagatgacacaatttcctttgggaagacacagatcccaagcagaagcaggaaacgaacatccactccccacaaacaaaatcctatcccctaa 9377149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 174 - 269
Target Start/End: Complemental strand, 9614104 - 9614009
Alignment:
Q  174 atcactaaagatgacacaatttcctttgccaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccc 269  Q
    |||| ||||||| |||||||||||||||  || | ||| ||| ||||||||||||||||| ||||||||| |||||||||| |||||  |||||||    
T  9614104 atcaataaagataacacaatttcctttggtaagacacagatctgaagcagaagcagaaaatgaacatccactccccaagaaaaaaaccatatcccc 9614009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 179 - 317
Target Start/End: Complemental strand, 9626626 - 9626488
Alignment:
Q  179 taaagatgacacaatttcctttgccaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgc 278  Q
    |||||||||  ||||| ||||||  |||| ||||||||||||| || |||||||| ||   ||| || || || |||||||| |||||||||||| ||      
T  9626626 taaagatgatgcaattccctttggaaacacacaaatccgaagctgatgcagaaaatgatgttcctttgccaaaaaacaaaaccctatcccctaaattcat 9626527  T
Q  279 caacttgacccatttcttctccttctcatcaagtctgaa 317  Q
    ||| || |||||||||||||||||||||| || ||||||    
T  9626526 caaattcacccatttcttctccttctcatgaaatctgaa 9626488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 156 - 325
Target Start/End: Complemental strand, 9486138 - 9485969
Alignment:
Q  156 aaaatcgttgaatgcatcatcactaaagatgacacaatttcctttgccaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaac 255  Q
    ||||||||| ||  ||| ||| ||||| || ||||| || || ||||||| | ||||||||||||| ||||||||||| | |||| | | |||||| |||    
T  9486138 aaaatcgttcaaaacataatccctaaatatcacacagttcccattgccaatacacaaatccgaagccgaagcagaaaaagcacattcttcccccaaaaac 9486039  T
Q  256 aaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 325  Q
    |||||  ||||||| ||| |   || ||  ||||| |||||||||||||||||||| || ||||||||||    
T  9486038 aaaaccatatcccccaaatttctcacctccacccacttcttctccttctcatcaagcctaaacacatcaa 9485969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 310
Target Start/End: Original strand, 9347957 - 9348088
Alignment:
Q  179 taaagatgacacaatttcctttgccaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgc 278  Q
    |||||| |||||||||||||||   || | | | ||| |||||||||||||||||||||||||||  ||| | ||| ||||  |||||||| |||  |      
T  9347957 taaagacgacacaatttcctttcggaatacatagatctgaagcagaagcagaaaacgaacatccacgcccaatgaaaaaaatcctatccccaaaatgcct 9348056  T
Q  279 caacttgacccatttcttctccttctcatcaa 310  Q
    |||||| ||||| |||||||||||||||||||    
T  9348057 caacttcacccacttcttctccttctcatcaa 9348088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 310
Target Start/End: Original strand, 9369611 - 9369742
Alignment:
Q  179 taaagatgacacaatttcctttgccaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgc 278  Q
    |||||| |||||||||||||||   || | | | ||| |||||||||||||||||||||||||||  ||| | ||| ||||  |||||||| |||  |      
T  9369611 taaagacgacacaatttcctttcggaatacatagatctgaagcagaagcagaaaacgaacatccacgcccaatgaaaaaaatcctatccccaaaatgcct 9369710  T
Q  279 caacttgacccatttcttctccttctcatcaa 310  Q
    |||||| ||||| |||||||||||||||||||    
T  9369711 caacttcacccacttcttctccttctcatcaa 9369742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 210 - 331
Target Start/End: Original strand, 9756381 - 9756502
Alignment:
Q  210 caaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatca 309  Q
    ||||||||| ||||| ||||| || ||||| || | ||| || |||||||| |||||||| ||| || |||||||||||||  | ||||| |||||||||    
T  9756381 caaatccgatgcagatgcagagaatgaacagccttccccgaaaaacaaaaccctatcccccaaattcaccaacttgacccaccttttctctttctcatca 9756480  T
Q  310 agtctgaacacatcaagcttta 331  Q
    || ||  ||||||||| |||||    
T  9756481 agcctatacacatcaatcttta 9756502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 291
Target Start/End: Complemental strand, 9441915 - 9441815
Alignment:
Q  191 aatttcctttgccaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgaccca 290  Q
    |||| |||||| ||||| ||| |||| | || ||||||||||| ||||||  |||| | ||||||||||| |||||||||||||||  |||||| |||||    
T  9441915 aattccctttgacaacacacatatccaaggctgaagcagaaaatgaacatttattcacaaagaacaaaaccctatcccctaaactcatcaacttcaccca 9441816  T
Q  291 t 291  Q
    |    
T  9441815 t 9441815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 325
Target Start/End: Original strand, 9686751 - 9686799
Alignment:
Q  277 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 325  Q
    |||||||||||||| |||||||| ||||||||||| ||||| |||||||    
T  9686751 gccaacttgacccacttcttctcgttctcatcaagcctgaatacatcaa 9686799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 130
Target Start/End: Complemental strand, 9695891 - 9695838
Alignment:
Q  77 agtactcaggataatcagccaaaggggaaacccggcattgatccaagtgaaaaa 130  Q
    |||| ||||||||| ||| |||||| |||||||| | |||||||||||||||||    
T  9695891 agtaatcaggataaccagacaaaggtgaaacccgaccttgatccaagtgaaaaa 9695838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 239
Target Start/End: Complemental strand, 16011797 - 16011768
Alignment:
Q  210 caaatccgaagcagaagcagaaaacgaaca 239  Q
    ||||||||||||||||||||||||||||||    
T  16011797 caaatccgaagcagaagcagaaaacgaaca 16011768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 16011892 - 16011844
Alignment:
Q  85 ggataatcagccaaaggggaaacccggcattgatccaagtgaaaaacac 133  Q
    |||||||||| |||||| |||| ||| | ||||||||||||||||||||    
T  16011892 ggataatcagacaaaggtgaaatccgaccttgatccaagtgaaaaacac 16011844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 165; Significance: 4e-88; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 82 - 430
Target Start/End: Complemental strand, 44689028 - 44688680
Alignment:
Q  82 tcaggataatcagccaaaggggaaacccggcattgatccaagtgaaaaacacacatcccacaaagcatctggtcaaaatcgttgaatgcatcatcactaa 181  Q
    ||||||||||| | |||||||||||| | || |||||||||||||||||||||||||||||||||||| | |||||||| |||||| |  |||  | | |    
T  44689028 tcaggataatcggacaaaggggaaactctgcgttgatccaagtgaaaaacacacatcccacaaagcatatcgtcaaaatagttgaaggattcacaagtga 44688929  T
Q  182 agatgacacaatttcctttgccaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaa 281  Q
    |||| |||||||| |||||| ||| ||||||||||||||||| || |||||| ||| || |||||||||||||||||| ||||| |||||||||||  ||    
T  44688928 agattacacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactcgttaa 44688829  T
Q  282 cttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctact 381  Q
    ||| ||||||||||| | ||||||||  ||  ||||||||||||||  || |||||||||||| ||||| ||||||| |||||||||||| ||||| |||    
T  44688828 ctttacccatttcttatgcttctcattgagcgtgaacacatcaagccgtagaccatcttcacccgggaacccaaaaccatgagagtcatagatgtccact 44688729  T
Q  382 agcaacaactcacgctcactctctaccaggaatttcatgtcccctccat 430  Q
    |||||||||||||  |||||||||||||||||||| |||||||||||||    
T  44688728 agcaacaactcaccttcactctctaccaggaattttatgtcccctccat 44688680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 265 - 430
Target Start/End: Complemental strand, 13170744 - 13170579
Alignment:
Q  265 tcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgag 364  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||    
T  13170744 tcccctaaactcgccaacttgacccatttcttctccttttcatcaagtctgaacacatcaagctttaaaccatattcaccagggaaaccgtaacgatgag 13170645  T
Q  365 agtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctccat 430  Q
     |||||| ||||| |||||||||||||||| ||| ||||| |||| ||||||||||||||||||||    
T  13170644 ggtcatagatgtccactagcaacaactcaccctcgctctcgaccaagaatttcatgtcccctccat 13170579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 9 - 201
Target Start/End: Complemental strand, 13170954 - 13170762
Alignment:
Q  9 tactctttttatcttttcatgattgaaacttttggcgatcccttacggagatggccaaaaagatgtggagtactcaggataatcagccaaaggggaaacc 108  Q
    |||||||||||||||||||  | || | || ||| |||||| ||  |||| |||||||||  |  || ||||||| ||| ||||||  |||||||||| |    
T  13170954 tactctttttatcttttcacaaatgcagctgttgacgatccattctggaggtggccaaaacaagttgaagtactcgggacaatcagataaaggggaaagc 13170855  T
Q  109 cggcattgatccaagtgaaaaacacacatcccacaaagcatctggtcaaaatcgttgaatgcatcatcactaaagatgacacaatttcctttg 201  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| || || |||||||||||||||||||||||||||||||||||||    
T  13170854 cggcattgatccaagtgaaaaacacacatcccacaaagcatctcgtcaacatagtggaatgcatcatcactaaagatgacacaatttcctttg 13170762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 4e-51; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 118 - 430
Target Start/End: Original strand, 18991113 - 18991422
Alignment:
Q  118 tccaagtgaaaaacacacatcccacaaagcatctggtcaaaatcgttgaatgcatcatcactaaagatgacacaatttcctttgccaacagacaaatccg 217  Q
    ||||||| ||||||||||||||||||  |||| |  ||||||  | |||| ||||| ||| |||||| ||||||||| |||||| ||||||| ||||| |    
T  18991113 tccaagtcaaaaacacacatcccacatcgcatgttatcaaaagggatgaacgcatcgtcaataaagacgacacaattccctttgacaacagataaatcag 18991212  T
Q  218 aagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||  | || |   ||||| |||||   |||||| ||| || ||    
T  18991213 aagcagaagcagaaaacgaacatccattccccaagaacaaaaccctattccctaagctcttcgacct---ccattccttctttctctcattaagcctaaa 18991309  T
Q  318 cacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttc 417  Q
    ||| |  || |||| ||| | ||| |||||||| ||||||||||| |||||| | ||||| ||||||||||||||||  |||| |||||||| |||||||    
T  18991310 caccttcagttttagacctttttcgccagggaacccaaaacaatgcgagtcacagatgtccactagcaacaactcaccttcacactctaccaagaatttc 18991409  T
Q  418 atgtcccctccat 430  Q
    || ||||||||||    
T  18991410 atatcccctccat 18991422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 169 - 320
Target Start/End: Original strand, 4428591 - 4428742
Alignment:
Q  169 gcatcatcactaaagatgacacaatttcctttgccaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatccc 268  Q
    ||||||||| |||||||||||||||| |||||   ||||||||| || |||||||| ||||||||| |||||||||||||||| |||||||| |||||||    
T  4428591 gcatcatcaataaagatgacacaattccctttagtaacagacaactcagaagcagaggcagaaaacaaacatccattccccaaaaacaaaaccctatccc 4428690  T
Q  269 ctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacac 320  Q
    | ||||||| ||| || ||||||||   | ||||||||||||| || |||||    
T  4428691 ccaaactcgtcaatttcacccatttacgcgccttctcatcaagcctaaacac 4428742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 169 - 276
Target Start/End: Original strand, 4439820 - 4439927
Alignment:
Q  169 gcatcatcactaaagatgacacaatttcctttgccaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatccc 268  Q
    ||||||||| |||||||||||||||| |||||   |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |    
T  4439820 gcatcatcaataaagatgacacaattccctttagaaacacacaaatccgaagcagaagcagaaaacgaacatccattccccaaaaacaaaaccctatctc 4439919  T
Q  269 ctaaactc 276  Q
    | ||||||    
T  4439920 ccaaactc 4439927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 191 - 307
Target Start/End: Original strand, 235195 - 235311
Alignment:
Q  191 aatttcctttgccaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgaccca 290  Q
    |||| ||||||  |||| ||||||||||||||||||||||||||||||||     ||||||||| |||||||||||||||||| | |||||||| |||||    
T  235195 aattccctttgggaacacacaaatccgaagcagaagcagaaaacgaacatagcaaccccaagaagaaaactctatcccctaaatttgccaacttcaccca 235294  T
Q  291 tttcttctccttctcat 307  Q
     ||||||||||| ||||    
T  235295 cttcttctccttttcat 235311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 187 - 302
Target Start/End: Complemental strand, 8814500 - 8814385
Alignment:
Q  187 acacaatttcctttgccaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttga 286  Q
    |||||||| ||||||  |||| |||||||| |||||||||||||||| |||||      |||||| ||||||||||||||||||||| |||||||||| |    
T  8814500 acacaattccctttgggaacacacaaatccaaagcagaagcagaaaatgaacacaaggaccccaaaaacaaaactctatcccctaaattcgccaacttca 8814401  T
Q  287 cccatttcttctcctt 302  Q
    |||| |||||||||||    
T  8814400 cccacttcttctcctt 8814385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 183 - 300
Target Start/End: Original strand, 246841 - 246958
Alignment:
Q  183 gatgacacaatttcctttgccaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaac 282  Q
    |||||||||||| ||||||  |||| |||||||| |||||||||||||||| || ||      |||||||||||||||| |||| |||||| | ||||||    
T  246841 gatgacacaattccctttgtgaacacacaaatccaaagcagaagcagaaaatgaccagaacaaccccaagaacaaaactgtatctcctaaattagccaac 246940  T
Q  283 ttgacccatttcttctcc 300  Q
    || |||||||||||||||    
T  246941 ttcacccatttcttctcc 246958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 187 - 307
Target Start/End: Complemental strand, 251532 - 251412
Alignment:
Q  187 acacaatttcctttgccaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttga 286  Q
    |||||||| | ||| | |||| |||||||||| |||||| ||||||| ||||||     |||||||||||||||||||||||||| | |||||||||| |    
T  251532 acacaattccgtttccgaacacacaaatccgatgcagaaacagaaaatgaacatagccaccccaagaacaaaactctatcccctatattcgccaacttta 251433  T
Q  287 cccatttcttctccttctcat 307  Q
    |||| ||||| ||||| ||||    
T  251432 cccacttcttttccttttcat 251412  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 302
Target Start/End: Original strand, 231589 - 231674
Alignment:
Q  217 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcctt 302  Q
    ||||||||||||||||| ||||||     |||||||||||||||| ||||||||||| | |||||||| ||||| ||| |||||||    
T  231589 gaagcagaagcagaaaatgaacatagggaccccaagaacaaaactatatcccctaaattagccaacttcacccacttcatctcctt 231674  T

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Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 179 - 322
Target Start/End: Complemental strand, 20694447 - 20694304
Alignment:
Q  179 taaagatgacacaatttcctttgccaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgc 278  Q
    |||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| |     
T  20694447 taaagatgacacaattccctttggcaacacacaaatccgaagcagaagcagaaaacgaacatccattccccaaaaacaaaaccctatcccccaaacttgt 20694348  T
Q  279 caacttgacccatttcttctccttctcatcaagtctgaacacat 322  Q
    |||  | ||||||||||||||||| |||||||| ||||||||||    
T  20694347 caaactcacccatttcttctccttttcatcaagcctgaacacat 20694304  T

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Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 177 - 325
Target Start/End: Original strand, 7041464 - 7041612
Alignment:
Q  177 actaaagatgacacaatttcctttgccaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactc 276  Q
    |||||||||||||||||| |||||| ||||  ||||||||||||||||| |||| ||||||||| | |  |||||||||||||| ||||||||||||||     
T  7041464 actaaagatgacacaattccctttggcaacgcacaaatccgaagcagaaacagagaacgaacatacttctcccaagaacaaaaccctatcccctaaacta 7041563  T
Q  277 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 325  Q
    | |||||| ||||| |||||||||||||||| |||| | |||| |||||    
T  7041564 gtcaacttcacccacttcttctccttctcattaagtttaaacaaatcaa 7041612  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 171 - 307
Target Start/End: Original strand, 7046801 - 7046937
Alignment:
Q  171 atcatcactaaagatgacacaatttcctttgccaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccct 270  Q
    |||| |||||| ||| |||||||| |||||| ||||| ||||||| |||  |||||||||||||||||||    ||||||||||||||||| ||||||||    
T  7046801 atcagcactaatgatcacacaattccctttggcaacatacaaatctgaaaaagaagcagaaaacgaacattttatccccaagaacaaaactttatcccct 7046900  T
Q  271 aaactcgccaacttgacccatttcttctccttctcat 307  Q
    |||||||  ||||| ||||| ||||||||||||||||    
T  7046901 aaactcgttaacttcacccacttcttctccttctcat 7046937  T

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Target: chr6; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 179 - 307
Target Start/End: Original strand, 7025720 - 7025854
Alignment:
Q  179 taaagatgacacaatttcctttgccaacagacaaatccgaagcagaagcagaaaacgaacat------ccattccccaagaacaaaactctatcccctaa 272  Q
    ||||||||||| |||| |||||| ||||| ||||||| |||||| |||||||||||||||||      ||   ||||||||||||||| ||||| |||||    
T  7025720 taaagatgacagaattccctttggcaacacacaaatctgaagcacaagcagaaaacgaacataccaaccccaaccccaagaacaaaaccctatctcctaa 7025819  T
Q  273 actcgccaacttgacccatttcttctccttctcat 307  Q
    ||||| |||||| ||||| ||||||||||||||||    
T  7025820 actcgtcaacttcacccacttcttctccttctcat 7025854  T

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Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 179 - 307
Target Start/End: Original strand, 7012784 - 7012918
Alignment:
Q  179 taaagatgacacaatttcctttgccaacagacaaatccgaagcagaagcagaaaacgaacat------ccattccccaagaacaaaactctatcccctaa 272  Q
    ||||||||||| |||| |||||| ||||| |||||||||||||| | |||||||||||||||      ||   ||||||||||||||  ||||| |||||    
T  7012784 taaagatgacagaattccctttggcaacacacaaatccgaagcacaggcagaaaacgaacataccaaccccaaccccaagaacaaaatcctatctcctaa 7012883  T
Q  273 actcgccaacttgacccatttcttctccttctcat 307  Q
    ||| | |||||| ||||| ||||||||||||||||    
T  7012884 acttgtcaacttcacccacttcttctccttctcat 7012918  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 246 - 307
Target Start/End: Original strand, 7029850 - 7029911
Alignment:
Q  246 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 307  Q
    ||||||||||||||| |||||||| ||||||| |||||| ||||| ||||||||||||||||    
T  7029850 ccccaagaacaaaaccctatccccgaaactcgtcaacttcacccacttcttctccttctcat 7029911  T

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Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 180 - 305
Target Start/End: Complemental strand, 9159646 - 9159515
Alignment:
Q  180 aaagatgacacaatttcctttgccaacagacaaatccgaagcagaagcagaaaacgaacat------ccattccccaagaacaaaactctatcccctaaa 273  Q
    |||||||| |||||| ||||||  |||| ||||||| ||||||||| ||||||||||| ||      ||   ||||||||||||||| ||||||||||||    
T  9159646 aaagatgatacaattccctttggaaacacacaaatctgaagcagaaacagaaaacgaatataccaaccccaaccccaagaacaaaaccctatcccctaaa 9159547  T
Q  274 ctcgccaacttgacccatttcttctccttctc 305  Q
    ||||  || || ||||| ||||||||||||||    
T  9159546 ctcgttaatttcacccacttcttctccttctc 9159515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 180 - 307
Target Start/End: Original strand, 9170782 - 9170915
Alignment:
Q  180 aaagatgacacaatttcctttgccaacagacaaatccgaagcagaagcagaaaacgaacat------ccattccccaagaacaaaactctatcccctaaa 273  Q
    |||||||| |||||| |||| |  |||| ||||||| ||||||||| ||||||||||| ||      ||   ||||||||||||||| ||||||||||||    
T  9170782 aaagatgatacaattcccttgggaaacacacaaatctgaagcagaaacagaaaacgaatataccaaccccaaccccaagaacaaaaccctatcccctaaa 9170881  T
Q  274 ctcgccaacttgacccatttcttctccttctcat 307  Q
    ||||  || || ||||| ||||||||||||||||    
T  9170882 ctcgttaatttcacccacttcttctccttctcat 9170915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 180 - 312
Target Start/End: Original strand, 3695661 - 3695792
Alignment:
Q  180 aaagatgacacaatttcctttgccaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgcc 279  Q
    |||||| |||||||| |||||| || |||||||||||||||||  ||||||||| ||||||    | || |||||||||||||||||||||||||||  |    
T  3695661 aaagatcacacaattccctttggcagcagacaaatccgaagcaatagcagaaaatgaacatatgataccgaagaacaaaactctatcccctaaactctac 3695760  T
Q  280 aacttgacccatttcttctccttctcatcaagt 312  Q
    |||||||  || ||||||| |||||||| ||||    
T  3695761 aacttga-tcacttcttcttcttctcattaagt 3695792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 325
Target Start/End: Complemental strand, 450219 - 450111
Alignment:
Q  217 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctga 316  Q
    ||||||||||||||||| ||| |   ||  || |||||||||| | |||| |||||| ||  |||||||||||| || ||||||||||||||||| || |    
T  450219 gaagcagaagcagaaaaggaatacagatcgcctaagaacaaaattgtatctcctaaattcctcaacttgacccactttttctccttctcatcaagcctaa 450120  T
Q  317 acacatcaa 325  Q
    |||||||||    
T  450119 acacatcaa 450111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 450363 - 450315
Alignment:
Q  85 ggataatcagccaaaggggaaacccggcattgatccaagtgaaaaacac 133  Q
    |||||||||| ||| || |||||||| | ||||||||||||||||||||    
T  450363 ggataatcagacaagggtgaaacccgaccttgatccaagtgaaaaacac 450315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 187 - 311
Target Start/End: Original strand, 18571086 - 18571213
Alignment:
Q  187 acacaatttcctttgccaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaa---aactctatcccctaaactcgccaact 283  Q
    |||||||| ||||||  |||| |||||||||||||||||  |||||| |||| | |  | || ||||||||   |||| ||||||||||||||| ||| |    
T  18571086 acacaattccctttggaaacacacaaatccgaagcagaaatagaaaaagaacctgccatgcctaagaacaaaacaactgtatcccctaaactcgtcaatt 18571185  T
Q  284 tgacccatttcttctccttctcatcaag 311  Q
    | ||||| ||||||||||||||||||||    
T  18571186 tcacccacttcttctccttctcatcaag 18571213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 180 - 307
Target Start/End: Original strand, 33541623 - 33541750
Alignment:
Q  180 aaagatgacacaatttcctttgccaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgcc 279  Q
    ||||| ||||||||| |||||| |||| |||||||| |||||||| |||||||| |||||  ||  ||| |||||||||||  |||| |||||||||       
T  33541623 aaagaggacacaattacctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactcttt 33541722  T
Q  280 aacttgacccatttcttctccttctcat 307  Q
    ||||| ||||| | | ||||||||||||    
T  33541723 aacttcacccactccgtctccttctcat 33541750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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