View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_270 (Length: 243)
Name: NF6866A_low_270
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_270 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 12 - 198
Target Start/End: Complemental strand, 3551782 - 3551596
Alignment:
| Q |
12 |
aaaatcagagccattagcaactccattcatgtcctcaaacatatcatcaaatgtccaatccatcctcctcaaatcaccaatatcattatctaaaggatat |
111 |
Q |
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| T |
3551782 |
aaaatcagagccattagcaactccattcatgtcctcaaacatatcatcaaatgtccaatccatcctcctcaaatcaccaatatcattatctaaaggatat |
3551683 |
T |
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| Q |
112 |
gaataagcatttgaattggtatcattttgtgattctagaggatctgaaggtacttgttgatcatcttcttgagtgagctcaattggt |
198 |
Q |
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| T |
3551682 |
gaataagcatttgaattggtatcattttgtgattctagaggatctgaaggtacttgatgatcttcttcttgagtgagctcaattggt |
3551596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 12 - 199
Target Start/End: Complemental strand, 3562941 - 3562763
Alignment:
| Q |
12 |
aaaatcagagccattagcaactccattcatgtcctcaaacatatcatcaaatgtccaatccatcctcctcaaatcaccaatatcattatctaaaggatat |
111 |
Q |
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| T |
3562941 |
aaaattagagcaattagcaaccctattcatgtcatcaaacatatcctcaaatctccaatccatccttctcaaatcaccaatatcattatctagaggatat |
3562842 |
T |
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| Q |
112 |
gaataagcatttgaattggtatcattttgtgattctagaggatctgaaggtacttgttgatcatcttcttgagtgagctcaattggta |
199 |
Q |
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| T |
3562841 |
gaataagaattggaattggcatcattttgtgat---------tctgaaggtacttgttgatcttcttcttgagtaagctcaattggta |
3562763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 51 - 139
Target Start/End: Complemental strand, 3574308 - 3574220
Alignment:
| Q |
51 |
catatcatcaaatgtccaatccatcctcctcaaatcaccaatatcattatctaaaggatatgaataagcatttgaattggtatcatttt |
139 |
Q |
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| T |
3574308 |
catatcctcaaatgtccaatccattgtcctcaaatcaccaatatcattatctagaggatatgaataagcatttgaattggtatcatttt |
3574220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 154 - 227
Target Start/End: Complemental strand, 3589347 - 3589274
Alignment:
| Q |
154 |
tctgaaggtacttgttgatcatcttcttgagtgagctcaattggtagtgactcatttgcaaacttagcagcaac |
227 |
Q |
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| T |
3589347 |
tctgaaggtacttgttgatcatcttcgtgagtgagctcaattggtggtgactcatttgcaaacttagcagcaac |
3589274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 3574038 - 3573971
Alignment:
| Q |
162 |
tacttgttgatcatcttcttgagtgagctcaattggtagtgactcatttgcaaacttagcagcaactt |
229 |
Q |
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| T |
3574038 |
tacttgatgatcttgttcttgagtgagctcaattggtggtgactcatttgcatacttagcagcaactt |
3573971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 3589503 - 3589433
Alignment:
| Q |
13 |
aaatcagagccattagcaactccattcatgtcctcaaacatatcatcaaatgtccaatccatcctcctcaa |
83 |
Q |
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| T |
3589503 |
aaattagagcaattagcaaccccattcaagtcatcaaacatatcctcaaatttccaatccattctcctcaa |
3589433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 3574194 - 3574135
Alignment:
| Q |
24 |
attagcaactccattcatgtcctcaaacatatcatcaaatgtccaatccatcctcctcaa |
83 |
Q |
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| T |
3574194 |
attagcaaccccattcatctcaacaaacatatccttaaatgtccaatccatcatcctcaa |
3574135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 10025486 - 10025411
Alignment:
| Q |
154 |
tctgaaggtacttgttgatcatcttcttgagtgagctcaattggtagtgactcatttgcaaacttagcagcaactt |
229 |
Q |
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| T |
10025486 |
tctgaagatacttgatgatcttcttcatgagtgagctcaattggtggtgactcatttgcaaacttagcagcaactt |
10025411 |
T |
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