View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_273 (Length: 242)
Name: NF6866A_low_273
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_273 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 37488047 - 37488275
Alignment:
| Q |
1 |
tgtgttagctgacattgtgaagacaacctggagacctggtggtatgtattatattacctttcaagcaaaagaacaagatcctcccaaccgccgtcctgtt |
100 |
Q |
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| T |
37488047 |
tgtgttagctgacattgtgaagacaacctggagacctggtggtatgtattatattacctttcaagcaaaagaacaagatcctcccaaccgccgtcctgtt |
37488146 |
T |
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| Q |
101 |
acaactttccaggcacagttctggaaaaggaggcctgagcctgaggtcatatcacgtgccatcaaaacctaacacacgcactatggtaacataataatgc |
200 |
Q |
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| T |
37488147 |
acaactttccaggcacagttctggaaaaggaggcctgagcctgaggtcatatcacgtgccatcaaaacctaacacacgcactatggtaacataataatgc |
37488246 |
T |
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| Q |
201 |
tgcattaatcttacgcatgctttcaatat |
229 |
Q |
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| T |
37488247 |
tgcattaatcttatgcatgctttcaatat |
37488275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 37493230 - 37493296
Alignment:
| Q |
1 |
tgtgttagctgacattgtgaagacaacctggagacctggtggtatgtattatattacctttcaagca |
67 |
Q |
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| T |
37493230 |
tgtgtttgctgacattgtgaagacaacctggagacctggtcgtacgtattacattacctttcaagca |
37493296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 142
Target Start/End: Original strand, 37494839 - 37494912
Alignment:
| Q |
69 |
aagaacaagatcctcccaaccgccgtcctgttacaactttccaggcacagttctggaaaaggaggcctgagcct |
142 |
Q |
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| T |
37494839 |
aagaacaagatcctcacaactgctgccctgttacaattttccaggcacaagtctgcaataagaggcctgagcct |
37494912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 189
Target Start/End: Original strand, 38922682 - 38922731
Alignment:
| Q |
140 |
cctgaggtcatatcacgtgccatcaaaacctaacacacgcactatggtaa |
189 |
Q |
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| T |
38922682 |
cctgaggtcaagtcgcgtgccatcaaaacctaactcactcactatggtaa |
38922731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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