View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_275 (Length: 242)
Name: NF6866A_low_275
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_275 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 15 - 242
Target Start/End: Complemental strand, 2838821 - 2838594
Alignment:
| Q |
15 |
atggacatcagacaatatgagaggttaattgaagaaagagctgcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaaagg |
114 |
Q |
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| T |
2838821 |
atggaaatgagacaatatgagaggttaattgaagaaagagctgcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaaagg |
2838722 |
T |
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| Q |
115 |
agaatctctttttggaaaaggaatttgaaagttataggccatcactttcatttgaaacttgtgatgatccatcacaggcagaaagcatcgtatcaaatgt |
214 |
Q |
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| T |
2838721 |
agaatctctttttggaaaaggaacttgaaagttataggccatcactttcatttgaaacttgtgatgatccatcacaggcagaaagcatcgtatcaaatgt |
2838622 |
T |
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| Q |
215 |
gaagaaagattgcgctgatgcagaccat |
242 |
Q |
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| T |
2838621 |
gaagaaagattgcgctgatgcagaccat |
2838594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 2842922 - 2842784
Alignment:
| Q |
15 |
atggacatcagacaatatgagaggttaattgaagaaagagctgcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaaagg |
114 |
Q |
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| T |
2842922 |
atggaaatgagacaatacgagaggttaattgaagaaagagtttcttatgatgaagaagagatgaatattatgcaagagattcttataagaagggaaaggg |
2842823 |
T |
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| Q |
115 |
agaatctctttttggaaaaggaatttgaaagttataggc |
153 |
Q |
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| T |
2842822 |
aaaatctttttttggaaaaggaacttgaaacttttaggc |
2842784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 191
Target Start/End: Complemental strand, 2842705 - 2842671
Alignment:
| Q |
157 |
cactttcatttgaaacttgtgatgatccatcacag |
191 |
Q |
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| T |
2842705 |
cactttcatttgaaacatgtgatgatccatcacag |
2842671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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