View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_276 (Length: 242)
Name: NF6866A_low_276
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_276 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 24301046 - 24301264
Alignment:
| Q |
12 |
tcaatttagacatatcatattttatttccaaccctacaacctagtaaaatatctttaactttatgctcattcttgtaccaattttcatttgggcttcgaa |
111 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
24301046 |
tcaacttagacatatcatattttatttccaaccatacaacctagtaaaatatctttaactttatgctcattcttgtaccaattttcacttgggctttgaa |
24301145 |
T |
|
| Q |
112 |
gcccgcagtgtgggttcggatgagcatctgtttagagctattgatgagcttttttcaactcaacgaggaaacttttcttcaacattgatcagagtccact |
211 |
Q |
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|||||||||||||||| |||| ||| |||||| |||| ||| ||||||||| | || |||| ||||||||||||||||||||||||||||||||| |
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| T |
24301146 |
gcccgcagtgtgggttatgatgcgcacctgtttggagccatttatgagctttcatacgcttaacggagaaacttttcttcaacattgatcagagtccact |
24301245 |
T |
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| Q |
212 |
ccaacacttccaacatatt |
230 |
Q |
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||||||||||||||||||| |
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| T |
24301246 |
ccaacacttccaacatatt |
24301264 |
T |
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