View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6866A_low_285 (Length: 240)
Name: NF6866A_low_285
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_285 |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 6e-98; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 21 - 225
Target Start/End: Complemental strand, 26975725 - 26975521
Alignment:
| Q |
21 |
agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||| |
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|
| T |
26975725 |
agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagtagtgagttcacttttaatattcgag |
26975626 |
T |
|
| Q |
121 |
atttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattc |
220 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
26975625 |
atttgagtccaacaaggtaatcagcaacatgtaaaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcacgttcatattc |
26975526 |
T |
|
| Q |
221 |
atttc |
225 |
Q |
| |
|
||||| |
|
|
| T |
26975525 |
atttc |
26975521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 25 - 225
Target Start/End: Complemental strand, 26636416 - 26636216
Alignment:
| Q |
25 |
ttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagattt |
124 |
Q |
| |
|
||||||| |||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26636416 |
ttgtcttgcccattccttcggttccaaggattcctattatgcagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagattt |
26636317 |
T |
|
| Q |
125 |
gagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattcattt |
224 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
26636316 |
gagtccaacaaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcacgttcatattcattt |
26636217 |
T |
|
| Q |
225 |
c |
225 |
Q |
| |
|
| |
|
|
| T |
26636216 |
c |
26636216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 25 - 225
Target Start/End: Complemental strand, 26742382 - 26742182
Alignment:
| Q |
25 |
ttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagattt |
124 |
Q |
| |
|
||||||| |||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26742382 |
ttgtcttgcccattccttcggttccaaggattcctattatgcagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagattt |
26742283 |
T |
|
| Q |
125 |
gagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattcattt |
224 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26742282 |
gagtccaacaaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcacgttcatattcattt |
26742183 |
T |
|
| Q |
225 |
c |
225 |
Q |
| |
|
| |
|
|
| T |
26742182 |
c |
26742182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 21 - 225
Target Start/End: Complemental strand, 26950517 - 26950313
Alignment:
| Q |
21 |
agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag |
120 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||| | || ||||| ||| |||||| ||||||||||||||||||| |
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|
| T |
26950517 |
agtgttgtctttcccattcccccagttccaaggattcctatcatgcagactccatcgtttgatcccaactctgaaagtgaattcacttctgatattcgag |
26950418 |
T |
|
| Q |
121 |
atttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattc |
220 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26950417 |
atttgagtccaacaaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattc |
26950318 |
T |
|
| Q |
221 |
atttc |
225 |
Q |
| |
|
||||| |
|
|
| T |
26950317 |
atttc |
26950313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 21 - 225
Target Start/End: Complemental strand, 26959900 - 26959696
Alignment:
| Q |
21 |
agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag |
120 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||| ||| |||||||||| | || ||||| ||| |||||| ||||||| ||||||||||| |
|
|
| T |
26959900 |
agtgttgtctttcccattcctccagttccaaggattcctatcatgcagactccatcgtttgatcccaactctgaaagtgaattcacttttgatattcgag |
26959801 |
T |
|
| Q |
121 |
atttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattc |
220 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||| |||||| ||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
26959800 |
atttgagaccaacaaggtaatcagcaacatgtaaaggaacatggttaatcttgttggagacgtctgtaactattttttcaataaaatcacgttcatactc |
26959701 |
T |
|
| Q |
221 |
atttc |
225 |
Q |
| |
|
||||| |
|
|
| T |
26959700 |
atttc |
26959696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 21 - 225
Target Start/End: Complemental strand, 26849486 - 26849282
Alignment:
| Q |
21 |
agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag |
120 |
Q |
| |
|
|||||||| || |||||||| ||||||||||||||||||||| | ||||||||||| |||| |||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
26849486 |
agtgttgtttttcccattcctccagttccaaggattcctattttccagactccatcattagattccaattctagaagtgaattcacttctgatattcgag |
26849387 |
T |
|
| Q |
121 |
atttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattc |
220 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| | |||||| ||||||||||||| |||||| || |||||||||| ||||||||| | |||||||||| |
|
|
| T |
26849386 |
atttaagtccaacaaggtaatcagcaacatgcaaaggaacatggttgatcttgttggagacatccttaactattttcccaataaaatggtgttcatattc |
26849287 |
T |
|
| Q |
221 |
atttc |
225 |
Q |
| |
|
||||| |
|
|
| T |
26849286 |
atttc |
26849282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 21 - 205
Target Start/End: Original strand, 27664613 - 27664797
Alignment:
| Q |
21 |
agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgag |
120 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||| |||||||||| ||| | ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27664613 |
agtgttgtcttacccagacctccagttccaaggattcctattatgtagactccatcggtacatcccaagtctagaagtgaattcacttctgatattcgag |
27664712 |
T |
|
| Q |
121 |
atttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaa |
205 |
Q |
| |
|
||| ||||||||| ||||| ||||||||||||| | || |||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
27664713 |
attcgagtccaacaaggtactcagcaacatgtaaatgacaacggttgatcttgttggagacgtctgtaactatttcttcaataaa |
27664797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 24 - 225
Target Start/End: Complemental strand, 25074638 - 25074440
Alignment:
| Q |
24 |
gttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagatt |
123 |
Q |
| |
|
|||||||| |||||||| |||||||||| ||||||||||||| | ||||||| || | ||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
25074638 |
gttgtcttgcccattccaccagttccaacgattcctattatgcatactccat---tatatcccaagtctagaagtgaattcacttctgaaattcgagatc |
25074542 |
T |
|
| Q |
124 |
tgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattcatt |
223 |
Q |
| |
|
|| ||||| |||||||||| |||||||| ||||| ||||| ||||||| |||||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
25074541 |
gaagaccaacaaggtaatcagtaacatgtaaaggaatttggttaatcttgttggagacgtctctaactattttttcaataaaatcacgttcatattcatt |
25074442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 31288986 - 31288876
Alignment:
| Q |
114 |
attcgagatttgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgtt |
213 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||| |||||| ||||| ||||||| |||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
31288986 |
attcgagatttgagaccaacaaggtaatcagcaacatgtaaaggaacatggttaatcttgttggagacatctgtaactattttttcaataaaatctcgtt |
31288887 |
T |
|
| Q |
214 |
catattcattt |
224 |
Q |
| |
|
||||||||||| |
|
|
| T |
31288886 |
catattcattt |
31288876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 31289042 - 31288986
Alignment:
| Q |
21 |
agtgttgtcttacccattcccccagttccaaggattcctattatgaagactccatca |
77 |
Q |
| |
|
|||||||| |||||| |||| ||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
31289042 |
agtgttgttttaccccttcctccagttccaagtattcctattatgcagactccatca |
31288986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 24 - 225
Target Start/End: Original strand, 17992626 - 17992827
Alignment:
| Q |
24 |
gttgtcttacccattcccccagttccaaggattcctattatgaagactccatcagtagaccccaagtctagaagtgagttcacttctgatattcgagatt |
123 |
Q |
| |
|
|||||||| |||||||| ||||| |||||||||||||||||| |||| |||||| || | |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
17992626 |
gttgtcttgcccattccaccagtaccaaggattcctattatgcagacaccatcattatattccaagtctagaagtgaattcacttctgatattcgagatt |
17992725 |
T |
|
| Q |
124 |
tgagtccaactaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactattttttcaataaaatcgcgttcatattcatt |
223 |
Q |
| |
|
|||| |||| |||||||| |||||||||| ||||||||||| ||||||| ||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
17992726 |
tgagaccaataaggtaatcggcaacatgtaatggaacgtggttaatcttgttggaagtgtctgtaactattttttcaataaaatcacgttcatattcatt |
17992825 |
T |
|
| Q |
224 |
tc |
225 |
Q |
| |
|
|| |
|
|
| T |
17992826 |
tc |
17992827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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