View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_287 (Length: 240)
Name: NF6866A_low_287
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_287 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 4055130 - 4054925
Alignment:
| Q |
17 |
cataacagtaatatctttgtttctctgtttctcttccccaacaacattgatatgtctttctaaacaccaacgttaaacaaaacaaaatttgttttagaag |
116 |
Q |
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| T |
4055130 |
cataacagtgatatctttgtttctctgtttctcttccccaacaacattgatatgtctttctaaacaccaacgttaaacaaaacaaaatttgtttcagaag |
4055031 |
T |
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| Q |
117 |
acactctttgtttcgaagtttgactgtgttt-atgtgtttttctctcgaagtgtctacacaaagtaaaatccgaatagggttattgggtcggtgggtcgg |
215 |
Q |
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||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4055030 |
acactctttgtttcgaagtttcactgtgtttaatgtgtttttctctcgaactgtctacacaaagtaagatccgaatagggttattgggtcggtgggtcgg |
4054931 |
T |
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| Q |
216 |
gtcatc |
221 |
Q |
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|||||| |
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| T |
4054930 |
gtcatc |
4054925 |
T |
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