View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_29 (Length: 434)
Name: NF6866A_low_29
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 12 - 415
Target Start/End: Original strand, 4322516 - 4322919
Alignment:
| Q |
12 |
aatattcaaaatcaaaatatcgaattaatccttttatttagcagaaaaaatttgattaattcttatcaaacaagtaaaataaacaggcaacgatgaagct |
111 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||| |||||| ||||| |
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| T |
4322516 |
aatattcaaaatcagaatatcgaattaatccttttatttagcagaattttttttattaattcttatcaaacaagtaaaatgtacatgcaacgcataagct |
4322615 |
T |
|
| Q |
112 |
ttatttacttaagatatatgaagaaaatatacgtgaccttatatcctctttcaatgtattcgatagcaacacgttctcctgtcttcttgtctttagccaa |
211 |
Q |
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||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||| |
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| T |
4322616 |
ttatttaattaagatatatgaagaaaatatacttgaccttatatcctctttcaatgtatttgatagcaacaagttctcctgtctttttgtctttagccaa |
4322715 |
T |
|
| Q |
212 |
cctagtcactccaaagtttccagaaccaaggtccttcaatatctcgtatctttcctcctccatttcacagtccaaataatactgttcaagtgacgatcca |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4322716 |
cctagtcactccaaagtttccagaaccaaggtccttcaatatctcgtatctttcctcctccatttcacagtccaaataatactgttcaattgacgatcca |
4322815 |
T |
|
| Q |
312 |
atgataaaaatgaatgaaaaataagtgatttagtcaaaactgaaataacattgtaatgaaaatgagaaggagaaaaatgtgaattagaaattagacaaag |
411 |
Q |
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||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4322816 |
atgataaaaatgaataaaacataagtgatttagtcaaaactgaaataacattgtaatgaaaatgagaaggagaaaaatgtgaattagaaattagacaaag |
4322915 |
T |
|
| Q |
412 |
aaaa |
415 |
Q |
| |
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|||| |
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| T |
4322916 |
aaaa |
4322919 |
T |
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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 165 - 265
Target Start/End: Complemental strand, 41124498 - 41124398
Alignment:
| Q |
165 |
atgtattcgatagcaacacgttctcctgtcttcttgtctttagccaacctagtcactccaaagtttccagaaccaaggtccttcaatatctcgtatcttt |
264 |
Q |
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||||||| || ||||||| |||| || || || ||||||||||||||||||| || ||||| |||||||||||||| ||||||||| ||| ||||||| |
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| T |
41124498 |
atgtatttgagagcaacaagttccccagtatttttgtctttagccaacctagcaacaccaaaatttccagaaccaagttccttcaatggctcatatcttt |
41124399 |
T |
|
| Q |
265 |
c |
265 |
Q |
| |
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| |
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|
| T |
41124398 |
c |
41124398 |
T |
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