View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6866A_low_295 (Length: 236)

Name: NF6866A_low_295
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6866A_low_295
NF6866A_low_295
[»] chr1 (16 HSPs)
chr1 (7-236)||(13244699-13244928)
chr1 (110-236)||(13271474-13271600)
chr1 (26-232)||(13085911-13086117)
chr1 (109-236)||(12964053-12964180)
chr1 (101-236)||(30368286-30368421)
chr1 (33-236)||(13100812-13101014)
chr1 (101-236)||(13070354-13070489)
chr1 (101-236)||(13094278-13094413)
chr1 (26-236)||(13081043-13081253)
chr1 (31-236)||(13007009-13007214)
chr1 (31-236)||(13204268-13204473)
chr1 (109-234)||(19279348-19279473)
chr1 (101-236)||(13129707-13129842)
chr1 (101-236)||(13161400-13161535)
chr1 (27-236)||(13065391-13065600)
chr1 (110-169)||(13010661-13010720)
[»] chr6 (1 HSPs)
chr6 (141-232)||(31380253-31380344)


Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 236
Target Start/End: Complemental strand, 13244928 - 13244699
Alignment:
Q  7 catcacacttgcaactttgttatatcaaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttaca 106  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||| ||||||||||||||    
T  13244928 catcacacttacaactttgttatatcaaatgcatcttttactgacttcgacctttaagccgtgtttcatgcgaacgacaatagaagttctcagcgttaca 13244829  T
Q  107 gggtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctag 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  13244828 gggtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacgaagctaagatctttcccaatacaacttctag 13244729  T
Q  207 gacctgcattgaaagctatgaacttgtaag 236  Q
    ||||||||||||||||||||||||||||||    
T  13244728 gacctgcattgaaagctatgaacttgtaag 13244699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 110 - 236
Target Start/End: Original strand, 13271474 - 13271600
Alignment:
Q  110 tgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggac 209  Q
    |||||||||||||| |||||| ||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||    
T  13271474 tgaccttccaccacatgtatgtgaaacttccataatacagaagctgcaaccattttcatttgaataaagctaatatctttcccaagacagcttctaggac 13271573  T
Q  210 ctgcattgaaagctatgaacttgtaag 236  Q
    |||||||||| ||||||||||||||||    
T  13271574 ctgcattgaatgctatgaacttgtaag 13271600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 26 - 232
Target Start/End: Original strand, 13085911 - 13086117
Alignment:
Q  26 ttatatcaaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttacagggtgaccttccaccacct 125  Q
    ||||||||||| ||||||||||| | || ||| || || || |||| |||||| ||  ||||||||  |||  | |||||||  ||||||||||| || |    
T  13085911 ttatatcaaattcatcttttactaactttgactttgaatccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaactt 13086010  T
Q  126 gtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctat 225  Q
    ||||| ||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||| || |||||    
T  13086011 gtatgtgaaacttccataacatagcagctgcaaccattttcatttgaacaatgctaatatctttcccaagacaacttcgaggacctgcattaaatgctat 13086110  T
Q  226 gaacttg 232  Q
    |||||||    
T  13086111 gaacttg 13086117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 109 - 236
Target Start/End: Complemental strand, 12964180 - 12964053
Alignment:
Q  109 gtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctagga 208  Q
    ||||||||||||||| | |||| |||||||||| |||| |  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12964180 gtgaccttccaccacttctatgtgaaacttccacaacacattagcagcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctagga 12964081  T
Q  209 cctgcattgaaagctatgaacttgtaag 236  Q
    ||||||||||| ||||||||||| ||||    
T  12964080 cctgcattgaatgctatgaacttataag 12964053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 101 - 236
Target Start/End: Complemental strand, 30368421 - 30368286
Alignment:
Q  101 gttacagggtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaac 200  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||| | |||||||||||| ||||||||||| || |||| |||||| || |||||||    
T  30368421 gttacagggtgaccttccacgacctgtatgtgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctttacccatacaac 30368322  T
Q  201 ttctaggacctgcattgaaagctatgaacttgtaag 236  Q
    ||||||| |||| |||||||||||||||||||||||    
T  30368321 ttctaggtcctgtattgaaagctatgaacttgtaag 30368286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 33 - 236
Target Start/End: Original strand, 13100812 - 13101014
Alignment:
Q  33 aaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttacagggtgaccttccaccacctgtatgcg 132  Q
    |||||||||||||| ||| || |||||| ||||| ||||||||| ||||  ||| ||||    || | |||| ||||||||||||||||||||||||| |    
T  13100812 aaatgcatcttttagtgactttgaccttcaagccatgtttcatgtgaagaacaaaagaaagcttcggggttatagggtgaccttccaccacctgtatgtg 13100911  T
Q  133 aaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctatgaacttg 232  Q
    |||||||  |||||||| |||||| ||||| ||||||||||  ||||||||||| || || |||||||||||||| |||| |||||||||||||||||||    
T  13100912 aaacttcggtaacaaagcagctgcgaccatcttcatttgaatgaagctaatatccttacccatacaacttctaggtcctg-attgaaagctatgaacttg 13101010  T
Q  233 taag 236  Q
    ||||    
T  13101011 taag 13101014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 101 - 236
Target Start/End: Complemental strand, 13070489 - 13070354
Alignment:
Q  101 gttacagggtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaac 200  Q
    |||||||||||||||||||||||||||||| ||||||||  |||||||| |||||| ||||| ||||||||||  || |||| |||||| || | |||||    
T  13070489 gttacagggtgaccttccaccacctgtatgtgaaacttctgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacccaaacaac 13070390  T
Q  201 ttctaggacctgcattgaaagctatgaacttgtaag 236  Q
    |||| ||||||| |||||||||||||||||||||||    
T  13070389 ttctcggacctgtattgaaagctatgaacttgtaag 13070354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 101 - 236
Target Start/End: Original strand, 13094278 - 13094413
Alignment:
Q  101 gttacagggtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaac 200  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||| |||||| ||||| ||||||||||  || ||||||||||| || ||||||     
T  13094278 gttacagggtgaccttccaccacctgtatgtgaaacttccgtaacaaagcagctgcgaccatcttcatttgaatgaaactaatatctttacctatacaaa 13094377  T
Q  201 ttctaggacctgcattgaaagctatgaacttgtaag 236  Q
    |||| || ||||  ||||||||||||||||||||||    
T  13094378 ttctgggtcctgtgttgaaagctatgaacttgtaag 13094413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 26 - 236
Target Start/End: Complemental strand, 13081253 - 13081043
Alignment:
Q  26 ttatatcaaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttacagggtgaccttccaccacct 125  Q
    ||||||||||||||||||||||  |||| |||||| ||||| |||| ||||||||||  |||||||   ||  |  |||  | |||||||||||||||||    
T  13081253 ttatatcaaatgcatcttttacgaattttgaccttaaagccatgttccatgcgaaggagaatagaaaccctaggaattattgagtgaccttccaccacct 13081154  T
Q  126 gtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctat 225  Q
    | ||| |||||||  |||| |  | ||||||||||||||||||||||| ||| |||||||||||||||| ||| ||||| ||||||||||| || |||||    
T  13081153 gaatgtgaaacttaaataaaactgcagctgcaaccattttcatttgaagaaaactaatatctttcccaagacagcttcttggacctgcattaaacgctat 13081054  T
Q  226 gaacttgtaag 236  Q
    |||||| ||||    
T  13081053 gaacttataag 13081043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 31 - 236
Target Start/End: Original strand, 13007009 - 13007214
Alignment:
Q  31 tcaaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttacagggtgaccttccaccacctgtatg 130  Q
    |||||||||||||||| ||| ||  ||||| ||||| ||||||||| ||||  ||| ||||    || | |||| |||||||||| ||||||||| ||||    
T  13007009 tcaaatgcatcttttagtgactttaaccttcaagccatgtttcatgtgaagaacaaaagaaagcttcggggttatagggtgacctgccaccacctttatg 13007108  T
Q  131 cgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctatgaact 230  Q
     |||||||   ||||||||  ||||| ||||| ||||||||||  ||||||||||| || || ||||||||||||||||||| |||||||||||||||||    
T  13007109 tgaaactttggtaacaaagctgctgcgaccatcttcatttgaatgaagctaatatccttgcccatacaacttctaggacctgtattgaaagctatgaact 13007208  T
Q  231 tgtaag 236  Q
    ||||||    
T  13007209 tgtaag 13007214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 31 - 236
Target Start/End: Original strand, 13204268 - 13204473
Alignment:
Q  31 tcaaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttacagggtgaccttccaccacctgtatg 130  Q
    |||||||||||||||| ||| ||  |||||||| || | ||||||| ||||  ||| |||| |  |  | |||||||||||||||||||| | || ||||    
T  13204268 tcaaatgcatcttttagtgactttaacctttaaaccatatttcatgtgaagaacaaaagaaatctttggggttacagggtgaccttccactatctttatg 13204367  T
Q  131 cgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctatgaact 230  Q
     |||| |||  |||||||| |||||| ||||| ||||||||||  || |||| |||||| || | ||||||||||||||||| |||||||||||||||||    
T  13204368 tgaaaattctgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacccaaacaacttctaggacctgtattgaaagctatgaact 13204467  T
Q  231 tgtaag 236  Q
    ||||||    
T  13204468 tgtaag 13204473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 109 - 234
Target Start/End: Complemental strand, 19279473 - 19279348
Alignment:
Q  109 gtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctagga 208  Q
    |||||||||||| ||||||||||||||||||||||| | || |||||||||||||||||||||||  ||  |||||||||| || | ||| ||||| |||    
T  19279473 gtgaccttccacgacctgtatgcgaaacttccataatacagcagctgcaaccattttcatttgaaggaaagtaatatcttttccgagacagcttctcgga 19279374  T
Q  209 cctgcattgaaagctatgaacttgta 234  Q
    |||||||| || ||||||||||||||    
T  19279373 cctgcattaaacgctatgaacttgta 19279348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 101 - 236
Target Start/End: Original strand, 13129707 - 13129842
Alignment:
Q  101 gttacagggtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaac 200  Q
    |||||||||||||||||||||||||||||| ||||||||  |||||||| |||||| ||||| ||||||||||  || |||| |||||| || ||||||     
T  13129707 gttacagggtgaccttccaccacctgtatgtgaaacttctgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacctatacaaa 13129806  T
Q  201 ttctaggacctgcattgaaagctatgaacttgtaag 236  Q
    |||| || ||||  |||||||||| |||||||||||    
T  13129807 ttctgggtcctgtgttgaaagctacgaacttgtaag 13129842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 101 - 236
Target Start/End: Original strand, 13161400 - 13161535
Alignment:
Q  101 gttacagggtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaac 200  Q
    |||||| ||||||||||||||||||||||| ||||||||| |||||||| |||||| ||||| ||||||||||  || |||| |||||| || ||||||     
T  13161400 gttacaaggtgaccttccaccacctgtatgtgaaacttccgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacctatacaaa 13161499  T
Q  201 ttctaggacctgcattgaaagctatgaacttgtaag 236  Q
    |||| || ||||  ||||||| ||||||||||||||    
T  13161500 ttctgggtcctgtgttgaaagatatgaacttgtaag 13161535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 236
Target Start/End: Complemental strand, 13065600 - 13065391
Alignment:
Q  27 tatatcaaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttacagggtgaccttccaccacctg 126  Q
    |||||||||||||||||||| ||| |  |||||| ||||| |||||||| |  |||| |||||||   ||  | |||||||| ||||| ||||| |  ||    
T  13065600 tatatcaaatgcatcttttagtgactatgaccttcaagccatgtttcattccgagggtaatagaaagccttggagttacaggatgaccatccactaaatg 13065501  T
Q  127 tatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctatg 226  Q
    ||||| |||||||||||  | ||  || ||| |||| ||||||| ||| ||| | |||||||| || | ||||||||| || ||||||||||||||||||    
T  13065500 tatgcaaaacttccatagtatagccgcggcagccatcttcatttcaacgaaggtgatatctttacccaaacaacttcttggccctgcattgaaagctatg 13065401  T
Q  227 aacttgtaag 236  Q
    ||||||||||    
T  13065400 aacttgtaag 13065391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 169
Target Start/End: Original strand, 13010661 - 13010720
Alignment:
Q  110 tgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatt 169  Q
    |||||||||||||| ||||||||||| ||||||||||||  |||||| ||||| ||||||    
T  13010661 tgaccttccaccacttgtatgcgaaatttccataacaaatcagctgcgaccatcttcatt 13010720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 232
Target Start/End: Complemental strand, 31380344 - 31380253
Alignment:
Q  141 ataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctatgaacttg 232  Q
    ||||||||||||| |||  ||| || |||||||  || |||| |||||| |||||||||||||  || |||| |||||||| ||||||||||    
T  31380344 ataacaaagaagccgcagacatcttaatttgaatgaaactaagatctttaccaatacaacttccgggtcctgtattgaaagatatgaacttg 31380253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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