View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_3 (Length: 710)
Name: NF6866A_low_3
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_3 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 647; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 647; E-Value: 0
Query Start/End: Original strand, 10 - 710
Target Start/End: Original strand, 13959903 - 13960605
Alignment:
| Q |
10 |
aagaatataggataaacaattgagttgatcgattttgagccacaaatatcagnnnnnnngtttatgtcaaacttacaccgatcaagtcgtagtcttagac |
109 |
Q |
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| T |
13959903 |
aagaatataggataaacaattgagttgatcgattttgagccacaaatatcagtttttttgtttatgtcaaacttacaccgatcaagtcatagtcttagac |
13960002 |
T |
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| Q |
110 |
gttacaagaaaaacta--aacttttactttcaatagtcaacgtcaatattaaggtggtttttcatagaattttaaataaatgtgggcgatgttaacctgg |
207 |
Q |
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| T |
13960003 |
gttacaagaaaaactataaacttttactttcaatagtcaacgtcaatattaaggtggtttttcgtagaattttaaataaatgtgggcgatgttaatctgg |
13960102 |
T |
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| Q |
208 |
attgcgacataatgattctttatgctgccaaaatcataacgcgacatgattaaggtcttattgttggatttgaccgtgattctcctcaatatcataaatt |
307 |
Q |
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| T |
13960103 |
attgcgacataatgattctttatgctgccaaaatcataacgcgacatgattaaggtcttattgttggatttgaccgtgattctcctcaatatcataaatt |
13960202 |
T |
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| Q |
308 |
atgatcacaaccaccattactacgaaacctattttattaatttggatatgaattgcagctgttaatggtgaaaacttcatggcaaaggatatcagcatcg |
407 |
Q |
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| T |
13960203 |
atgatcacaaccaccattactaagaaacctattttattaatttggatatgaattgcaggtgttaatggtgaaaacttcatggcaaaggatatcagcatcg |
13960302 |
T |
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| Q |
408 |
aaaacacagcaggaccagagaaacatcaagcagttgcactccgagtaacagcagacaaagcaatcttctacaactgccaaatagatggttaccaagcaac |
507 |
Q |
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| T |
13960303 |
aaaacacagcaggaccagagaaacatcaagcagttgcactccgagtaacagcagacaaagcaatcttctacaactgccaaatagatggttaccaagcaac |
13960402 |
T |
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| Q |
508 |
actcttcgccgaatcccaacgtcaattctaccgtgactgcagcatctctggcacaatcgacatgatctacggtgacgcctttgcagttttccaaaactgc |
607 |
Q |
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| T |
13960403 |
actcttcgccgaatcccaacgtcaattctaccgtgactgcagcatctctggcacaatcgacatgatctacggtgacgcctttgcagttttccaaaactgc |
13960502 |
T |
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| Q |
608 |
aaactaatcgtaagaaaaccattagaagaacaacaatgtttcgtagctgccgatggaagaaccaaatccgacagctcaagtggctttgttttccaaagtt |
707 |
Q |
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| T |
13960503 |
aaactaatcgtaagaaaaccattagaagaacaacaatgtttcgtagctgccgatggaagaaccaaatctgacagctcaagtggctttgttttccaaagtt |
13960602 |
T |
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| Q |
708 |
gtc |
710 |
Q |
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| T |
13960603 |
gtc |
13960605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 69 - 282
Target Start/End: Original strand, 13971421 - 13971636
Alignment:
| Q |
69 |
gtttatgtcaaacttacaccgatcaagtcgtagtcttagacgttacaagaaaaacta--aacttttactttcaatagtcaacgtcaatattaaggtggtt |
166 |
Q |
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| T |
13971421 |
gtttatgtcaaacttacaccaatcaagtcataatcttagacgttacaagaaaaactataaacttttactttcaatagtcaatgtcaatattaaggttgtc |
13971520 |
T |
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| Q |
167 |
tttcatagaattttaaataaatgtgggcgatgttaacctggattgcgacataatgattctttatgctgccaaaatcataacgcgacatgattaaggtctt |
266 |
Q |
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| T |
13971521 |
tgtcatagaattttaaataaatttgggcgacaattatcaagattgcgacataatgattctttatgttgtcaaaatcataacgaaacatgattaaggtctt |
13971620 |
T |
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| Q |
267 |
attgttggatttgacc |
282 |
Q |
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| T |
13971621 |
atttttggatttgacc |
13971636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 362 - 615
Target Start/End: Original strand, 13967421 - 13967674
Alignment:
| Q |
362 |
gcagctgttaatggtgaaaacttcatggcaaaggatatcagcatcgaaaacacagcaggaccagagaaacatcaagcagttgcactccgagtaacagcag |
461 |
Q |
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| T |
13967421 |
gcaggtgttaatggtgcaaacttcatggcaaaggatattggcttcgagaacacagcaggaacaaataaaaatcaagcagttgccctccgagtaacagcag |
13967520 |
T |
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| Q |
462 |
acaaagcaatcttctacaactgccaaatagatggttaccaagcaacactcttcgccgaatcccaacgtcaattctaccgtgactgcagcatctctggcac |
561 |
Q |
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| T |
13967521 |
atcaagcaatattccacaactgtcaaatggacggtttccaagacacactctacgtccaatcccaacgtcaattctaccgtgactgcgccatctctggcac |
13967620 |
T |
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| Q |
562 |
aatcgacatgatctacggtgacgcctttgcagttttccaaaactgcaaactaat |
615 |
Q |
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| T |
13967621 |
aatcgactttgtttttggcgacgcctttggagttttccaaaattgcaaactaat |
13967674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 431 - 628
Target Start/End: Complemental strand, 49871189 - 49870992
Alignment:
| Q |
431 |
catcaagcagttgcactccgagtaacagcagacaaagcaatcttctacaactgccaaatagatggttaccaagcaacactcttcgccgaatcccaacgtc |
530 |
Q |
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| T |
49871189 |
catcaagcagtggccctccgtgtaacagcagacaaagcattgttctacaactgtgaaatgaacggttaccaagatacactctacacacaatccaaaagac |
49871090 |
T |
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| Q |
531 |
aattctaccgtgactgcagcatctctggcacaatcgacatgatctacggtgacgcctttgcagttttccaaaactgcaaactaatcgtaagaaaacca |
628 |
Q |
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| T |
49871089 |
aattctaccgcgactgcaccattaccggaacaatcgactttgtctttggtgatgcagttggagttttccaaaactgcaaactcatcgttagaaaacca |
49870992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 434 - 548
Target Start/End: Complemental strand, 49865249 - 49865135
Alignment:
| Q |
434 |
caagcagttgcactccgagtaacagcagacaaagcaatcttctacaactgccaaatagatggttaccaagcaacactcttcgccgaatcccaacgtcaat |
533 |
Q |
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|||||||| || ||||| |||||||||||||||||| | ||||||||||| ||||| || |||||||||| ||||||| | | ||||| || | |||| |
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| T |
49865249 |
caagcagtggccctccgtgtaacagcagacaaagcattgttctacaactgtcaaatggacggttaccaagatacactctacacacaatccaaaagacaat |
49865150 |
T |
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| Q |
534 |
tctaccgtgactgca |
548 |
Q |
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| T |
49865149 |
tctaccgcgactgca |
49865135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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