View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_316 (Length: 230)
Name: NF6866A_low_316
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_316 |
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Alignment Details
Target: chr2 (Bit Score: 129; Significance: 6e-67; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 85 - 225
Target Start/End: Original strand, 19871557 - 19871697
Alignment:
| Q |
85 |
ccattgaaacgttacagcaaaacatcatctctctcacggcttcttcaccaccaccatgctccatcagtatcacttacttttcttcaaacattaacaccat |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
19871557 |
ccattgaaacgttacagcaaaacatcatctctctcacggcttcttcaccaccaccatgctccatcagtatcaattacttttcttcaaacattaacaccat |
19871656 |
T |
|
| Q |
185 |
gttctgtcagtctcccttatttttcttttgactacttccct |
225 |
Q |
| |
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||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
19871657 |
gttctgttagtctcccttatttttcttttgactacgtccct |
19871697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 85 - 225
Target Start/End: Original strand, 19876458 - 19876598
Alignment:
| Q |
85 |
ccattgaaacgttacagcaaaacatcatctctctcacggcttcttcaccaccaccatgctccatcagtatcacttacttttcttcaaacattaacaccat |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
19876458 |
ccattgaaacgttacagcaaaacatcatctctctcacggcttcttcaccaccaccatgctccatcagtatcaattacttttcttcaaacattaacaccat |
19876557 |
T |
|
| Q |
185 |
gttctgtcagtctcccttatttttcttttgactacttccct |
225 |
Q |
| |
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||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
19876558 |
gttctgttagtctcccttatttttcttttgactacgtccct |
19876598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 85 - 225
Target Start/End: Original strand, 19862087 - 19862227
Alignment:
| Q |
85 |
ccattgaaacgttacagcaaaacatcatctctctcacggcttcttcaccaccaccatgctccatcagtatcacttacttttcttcaaacattaacaccat |
184 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
19862087 |
ccattgaaacgttacagcaaaacatcatctatctcacggcttcttcaccaccaccatgctccatcagtatcaattacttttcttcaaacattaacaccat |
19862186 |
T |
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| Q |
185 |
gttctgtcagtctcccttatttttcttttgactacttccct |
225 |
Q |
| |
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||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
19862187 |
gttctgttagtctcccttatttttcttttgactacgtccct |
19862227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 85 - 225
Target Start/End: Original strand, 19866656 - 19866796
Alignment:
| Q |
85 |
ccattgaaacgttacagcaaaacatcatctctctcacggcttcttcaccaccaccatgctccatcagtatcacttacttttcttcaaacattaacaccat |
184 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
19866656 |
ccattgaaacgttacagcaaaacatcatctctctcacggcttcttcaccaccaccatgctccatcagtatcaattacttttcttcaaacattaacaccat |
19866755 |
T |
|
| Q |
185 |
gttctgtcagtctcccttatttttcttttgactacttccct |
225 |
Q |
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||||||| ||||||||||||||||||||| ||||| ||||| |
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| T |
19866756 |
gttctgttagtctcccttatttttcttttcactacgtccct |
19866796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 85 - 225
Target Start/End: Original strand, 36585339 - 36585479
Alignment:
| Q |
85 |
ccattgaaacgttacagcaaaacatcatctctctcacggcttcttcaccaccaccatgctccatcagtatcacttacttttcttcaaacattaacaccat |
184 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
36585339 |
ccattaaaacgttacagcaaaacatcatctctctcacggcttcttcaccaccaccatgctccatcagtatcaattacttttcttcaaacattaacaccat |
36585438 |
T |
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| Q |
185 |
gttctgtcagtctcccttatttttcttttgactacttccct |
225 |
Q |
| |
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| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
36585439 |
gctctgtcagtctcccttatttttcttttgactacgtccct |
36585479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 85 - 225
Target Start/End: Complemental strand, 2064392 - 2064256
Alignment:
| Q |
85 |
ccattgaaacgttacagcaaaacatcatctctctcacggcttcttcaccaccaccatgctccatcagtatcacttacttttcttcaaacattaacaccat |
184 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2064392 |
ccattgaaatgttacagcaaaacatcatctctctcacgacttcttcaccaccaccatgctccatcagtatc----acttttcttcaaacattaacaccat |
2064297 |
T |
|
| Q |
185 |
gttctgtcagtctcccttatttttcttttgactacttccct |
225 |
Q |
| |
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| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
2064296 |
gctctgtcagtctcccttatttttcttttgactacgtccct |
2064256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 85 - 225
Target Start/End: Complemental strand, 48581038 - 48580902
Alignment:
| Q |
85 |
ccattgaaacgttacagcaaaacatcatctctctcacggcttcttcaccaccaccatgctccatcagtatcacttacttttcttcaaacattaacaccat |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||| |
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| T |
48581038 |
ccattgaaacgttacagcaaaacatcatctctctcacggcttcttcaccaccaccatgctccatcagtatc----acttttctacaaatattaacaccat |
48580943 |
T |
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| Q |
185 |
gttctgtcagtctcccttatttttcttttgactacttccct |
225 |
Q |
| |
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| |||||||| |||||||||||||||||||||||| ||||| |
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| T |
48580942 |
gctctgtcaggctcccttatttttcttttgactacgtccct |
48580902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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