View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6866A_low_322 (Length: 230)

Name: NF6866A_low_322
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6866A_low_322
NF6866A_low_322
[»] chr1 (1 HSPs)
chr1 (1-225)||(36314413-36314640)
[»] chr8 (18 HSPs)
chr8 (53-177)||(19345334-19345458)
chr8 (53-177)||(19503885-19504009)
chr8 (65-177)||(19337681-19337793)
chr8 (78-177)||(19355714-19355813)
chr8 (54-177)||(19468410-19468533)
chr8 (54-177)||(19555331-19555454)
chr8 (66-180)||(19410958-19411072)
chr8 (66-180)||(19457977-19458091)
chr8 (66-180)||(19522987-19523101)
chr8 (54-159)||(19404923-19405028)
chr8 (60-157)||(19376801-19376898)
chr8 (66-177)||(19592308-19592416)
chr8 (66-180)||(19469355-19469466)
chr8 (66-180)||(19540279-19540390)
chr8 (69-151)||(19172660-19172742)
chr8 (66-164)||(19287901-19287999)
chr8 (66-151)||(19390779-19390864)
chr8 (88-135)||(19371145-19371192)
[»] chr6 (1 HSPs)
chr6 (54-150)||(19543241-19543337)


Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 36314640 - 36314413
Alignment:
Q  1 gggagctatcctcgaagggcaagttaacaagtggtgatgaagacaatgctagtggagaaattggaaatgcagatatatgttatggatataatagcaatgg 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36314640 gggagctatcctcgaagggcaagttaacaagtggtgttgaagacaatgctagtggagaaattggaaatgcagatatatgttatggatataatagcaatgg 36314541  T
Q  101 agggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaaggtgggaacacc---aagcaaaatggacaatgcatca 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  36314540 agggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaaggtgggaacaccaaaaagcaaaatggacaatgcatca 36314441  T
Q  198 tcatatgaatggaatgtaatttatggtt 225  Q
    ||||||||||||||||||||||||||||    
T  36314440 tcatatgaatggaatgtaatttatggtt 36314413  T

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Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 53 - 177
Target Start/End: Original strand, 19345334 - 19345458
Alignment:
Q  53 tggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtt 152  Q
    |||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||  ||||||||||    
T  19345334 tggagatattgggaatgcagatatgtgttatggatataatagcaatggagggtgccaaaaatgggaggaaataccaaattgtagggaaaatggtgaggtt 19345433  T
Q  153 tttcagaaaaaggtgggaacaccaa 177  Q
    |||||||||| ||||||||||||||    
T  19345434 tttcagaaaatggtgggaacaccaa 19345458  T

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Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 53 - 177
Target Start/End: Complemental strand, 19504009 - 19503885
Alignment:
Q  53 tggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtt 152  Q
    |||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||  ||||||||||    
T  19504009 tggagagattgggaatgcagatatgtgttatggatataatagcaatggagggtgccaaaaatgggaggaaataccaaattgtagggaaaatggtgaggtt 19503910  T
Q  153 tttcagaaaaaggtgggaacaccaa 177  Q
    ||||||||||  | |||||||||||    
T  19503909 tttcagaaaattgcgggaacaccaa 19503885  T

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Target: chr8; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 65 - 177
Target Start/End: Original strand, 19337681 - 19337793
Alignment:
Q  65 aaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaag 164  Q
    ||||||||| || |||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||| |    
T  19337681 aaatgcagacatgtgttatggatataatagcgatggagggtgccaaaaatgggaggaaataccaaattgtagggaacctggtgaggtttttcggaaaatg 19337780  T
Q  165 gtgggaacaccaa 177  Q
    ||||||| |||||    
T  19337781 gtgggaagaccaa 19337793  T

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Target: chr8; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 78 - 177
Target Start/End: Original strand, 19355714 - 19355813
Alignment:
Q  78 tgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaaggtgggaacaccaa 177  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||| |||||    
T  19355714 tgttatggatataatagcgatggagggtgccaaaaatgggaggaaataccaaattgtagggaacctggtgaggtttttcggaaaaaggtgggaagaccaa 19355813  T

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Target: chr8; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 54 - 177
Target Start/End: Complemental strand, 19468533 - 19468410
Alignment:
Q  54 ggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggttt 153  Q
    ||||| |||| |||||||||||| |||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||| |||||||||||  |    
T  19468533 ggagatattgtaaatgcagatatgtgttatggatataatagtgatggaggatgccaaaaatgggaggatataccaacttgtagggcacctggtgaggggt 19468434  T
Q  154 ttcagaaaaaggtgggaacaccaa 177  Q
    |||||||||||| ||||| |||||    
T  19468433 ttcagaaaaaggcgggaagaccaa 19468410  T

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Target: chr8; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 54 - 177
Target Start/End: Complemental strand, 19555454 - 19555331
Alignment:
Q  54 ggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggttt 153  Q
    ||||| |||| |||||||||||| |||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||| |||||||||||  |    
T  19555454 ggagatattgtaaatgcagatatgtgttatggatataatagtgatggaggatgccaaaaatgggaggatataccaacttgtagggcacctggtgaggggt 19555355  T
Q  154 ttcagaaaaaggtgggaacaccaa 177  Q
    |||||||||||| ||||| |||||    
T  19555354 ttcagaaaaaggcgggaagaccaa 19555331  T

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Target: chr8; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 66 - 180
Target Start/End: Original strand, 19410958 - 19411072
Alignment:
Q  66 aatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaagg 165  Q
    ||||||||||| ||||| |||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||    
T  19410958 aatgcagatatgtgttacggatataatagtgatggagggtgccaaaaatgggaggatataccaacttgcagggaacctggtgagatgtttcagaaaaagg 19411057  T
Q  166 tgggaacaccaagca 180  Q
     ||||| ||||||||    
T  19411058 cgggaagaccaagca 19411072  T

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Target: chr8; HSP #8
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 66 - 180
Target Start/End: Original strand, 19457977 - 19458091
Alignment:
Q  66 aatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaagg 165  Q
    ||||||||||| ||||| |||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||    
T  19457977 aatgcagatatgtgttacggatataatagtgatggagggtgccaaaaatgggaggatataccaacttgcagggaacctggtgagatgtttcagaaaaagg 19458076  T
Q  166 tgggaacaccaagca 180  Q
     ||||| ||||||||    
T  19458077 cgggaagaccaagca 19458091  T

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Target: chr8; HSP #9
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 66 - 180
Target Start/End: Complemental strand, 19523101 - 19522987
Alignment:
Q  66 aatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaagg 165  Q
    ||||||||||| ||||| |||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||    
T  19523101 aatgcagatatgtgttacggatataatagtgatggagggtgccaaaaatgggaggatataccaacttgcagggaacctggtgagatgtttcagaaaaagg 19523002  T
Q  166 tgggaacaccaagca 180  Q
     ||||| ||||||||    
T  19523001 cgggaagaccaagca 19522987  T

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Target: chr8; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 54 - 159
Target Start/End: Original strand, 19404923 - 19405028
Alignment:
Q  54 ggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggttt 153  Q
    ||||| ||||||||||||||||| |||||||||||||||||  | |||||||||||||| |||||||||||||||||||||||||||||||||||||| |    
T  19404923 ggagatattggaaatgcagatatgtgttatggatataatagggacggagggtgccaaaagtgggaggatataccaacttgtagggaacctggtgaggtgt 19405022  T
Q  154 ttcaga 159  Q
    ||||||    
T  19405023 ttcaga 19405028  T

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Target: chr8; HSP #11
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 60 - 157
Target Start/End: Original strand, 19376801 - 19376898
Alignment:
Q  60 attggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttca 157  Q
    |||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||    
T  19376801 attggaaatgcagatatatgttatggatataatagtgatcgagggtgccaaaaatgggaggatataccagcttgcagggaacctggtgaggtgtttca 19376898  T

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Target: chr8; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 66 - 177
Target Start/End: Original strand, 19592308 - 19592416
Alignment:
Q  66 aatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaagg 165  Q
    ||||||||||| ||||| ||||||| |    ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  19592308 aatgcagatatgtgttacggatatagtg---atggaggatgccaaaaatgggaggatataccaacttgcagggaacctggtgaggtttttcagaaaaagg 19592404  T
Q  166 tgggaacaccaa 177  Q
     |||||||||||    
T  19592405 cgggaacaccaa 19592416  T

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Target: chr8; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 66 - 180
Target Start/End: Complemental strand, 19469466 - 19469355
Alignment:
Q  66 aatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaagg 165  Q
    ||||||||||| ||||| ||||||| |    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  19469466 aatgcagatatgtgttacggatatagtg---atggaggatgccaaaaatgggaggatataccaacttgcagggaacctggtgaggtgtttcagaaaaagg 19469370  T
Q  166 tgggaacaccaagca 180  Q
     ||||| ||||||||    
T  19469369 cgggaagaccaagca 19469355  T

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Target: chr8; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 66 - 180
Target Start/End: Complemental strand, 19540390 - 19540279
Alignment:
Q  66 aatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaagg 165  Q
    ||||||||||| ||||| ||||||| |    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  19540390 aatgcagatatgtgttacggatatagtg---atggaggatgccaaaaatgggaggatataccaacttgcagggaacctggtgaggtgtttcagaaaaagg 19540294  T
Q  166 tgggaacaccaagca 180  Q
     ||||| ||||||||    
T  19540293 cgggaagaccaagca 19540279  T

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Target: chr8; HSP #15
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 19172742 - 19172660
Alignment:
Q  69 gcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggt 151  Q
    |||||||| |||||||| ||||||| | |||||||||||||||||||||||||||||||||| || |||||||| ||||||||    
T  19172742 gcagatatgtgttatggctataataccgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgaggt 19172660  T

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Target: chr8; HSP #16
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 66 - 164
Target Start/End: Original strand, 19287901 - 19287999
Alignment:
Q  66 aatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaag 164  Q
    ||||||||||  ||||||||||||||||   ||| |||||||||||||||||||||||| |||||||| ||||||| ||||||||| ||||| ||||||    
T  19287901 aatgcagataagtgttatggatataataatgatgaagggtgccaaaaatgggaggatatgccaacttgcagggaacgtggtgaggtctttcaaaaaaag 19287999  T

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Target: chr8; HSP #17
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 66 - 151
Target Start/End: Original strand, 19390779 - 19390864
Alignment:
Q  66 aatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggt 151  Q
    ||||||||||  |||||||||||||||||  |||  |||||||||||||||||||||||||||||||| ||||| ||| |||||||    
T  19390779 aatgcagataagtgttatggatataatagtgatgccgggtgccaaaaatgggaggatataccaacttgcagggaccctcgtgaggt 19390864  T

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Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 135
Target Start/End: Original strand, 19371145 - 19371192
Alignment:
Q  88 ataatagcaatggagggtgccaaaaatgggaggatataccaacttgta 135  Q
    ||||||| ||||| || ||||||||||||||| |||||||||||||||    
T  19371145 ataatagtaatggtggatgccaaaaatgggagtatataccaacttgta 19371192  T

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Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 19543241 - 19543337
Alignment:
Q  54 ggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgagg 150  Q
    ||||| ||||||||||||||  | |||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  19543241 ggagatattggaaatgcagacttgtgttatggatataatatcaacggagggtgccaaaaatgggaggatataccaagttgtagggaacctggtgagg 19543337  T

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