View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_323 (Length: 230)
Name: NF6866A_low_323
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_323 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 8349166 - 8349390
Alignment:
| Q |
1 |
tatcctgggagaatgaaaatgagtaataatgttgaatatgcacgaagatatatccatggtgtggcagatggagatgcattcagcgactacaatcgatgtc |
100 |
Q |
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| T |
8349166 |
tatcccgggagaatgaaaatgagtaataatgttgaatatgcacgaagatatatccatggtgtggcagatggaaatgcattcagcgactacaatcgatgtc |
8349265 |
T |
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| Q |
101 |
tacccgaagctggaaag-ataactcatccaattattatgttataaaatttgagggtacttataactcaattcatgtgatttccaatacttttccaatgtt |
199 |
Q |
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| T |
8349266 |
tacccaaagctggaaagaataactcatccaattattatgttataaaatttgagggtacttatagctcaattcatgtgatttccaatatttttccaatgtt |
8349365 |
T |
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| Q |
200 |
ggattagattctaagatgacaaaga |
224 |
Q |
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| T |
8349366 |
ggattagatactaagatgacaaaga |
8349390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 42 - 224
Target Start/End: Complemental strand, 8483082 - 8482899
Alignment:
| Q |
42 |
acgaagatatatccatggtgtggcagatggagatgcattcagcgactacaatcgatgtctacccgaagctggaaaga-taactcatccaattattatgtt |
140 |
Q |
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| T |
8483082 |
acgaagatatgtccatggtgtggcagagagagatgcattcaccgactccaatcgatgtctacccggagctggaaagaataactcattcaattattatgtt |
8482983 |
T |
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| Q |
141 |
ataaaatttgagggtacttataactcaattcatgtgatttccaatacttttccaatgttggattagattctaagatgacaaaga |
224 |
Q |
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| T |
8482982 |
ctaaaatttgagggtacttataactcaatttatgtgatttccaatatgtttccaatgttggattagattctaagatgacaaaga |
8482899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 41 - 224
Target Start/End: Original strand, 8355254 - 8355443
Alignment:
| Q |
41 |
cacgaagatatatccatggtgtggcagatggagatgcattcagcgactacaatcgatgtctacccgaagctggaaag-ataactcatccaattattatgt |
139 |
Q |
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| T |
8355254 |
cacgaagatatgtccatggtgtggcagatggagatgcattcagcgtctccaatcgatgtctacctggagctggaaagaataacttatccaattattatgt |
8355353 |
T |
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| Q |
140 |
tataaaatttgagggt--------acttataactcaattcatgtgatttccaatacttttccaatgttggattagattctaagatgacaaaga |
224 |
Q |
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| T |
8355354 |
tctaaaatttgagggtttcgattaacttat---tcaatttatgtgatttccaatatgtttccaatgttggattagattctaagatgacaaaga |
8355443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 8531790 - 8531843
Alignment:
| Q |
159 |
tataactcaattcatgtgatttccaatacttttccaatgttggattagattcta |
212 |
Q |
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| T |
8531790 |
tataactcaattcctaagatttctagtatttttccaatgttggattagattcta |
8531843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 8351801 - 8351865
Alignment:
| Q |
159 |
tataactcaattcatgtgatttccaatacttttccaatgttggattagattctaagatgacaaag |
223 |
Q |
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| T |
8351801 |
tataactcaattcctgtaatttctattatttttacaatgttggattagattatatgacgacaaag |
8351865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 1169626 - 1169525
Alignment:
| Q |
15 |
gaaaatgagtaataatgttgaatatgcacgaagatatatccatggtgtggcagatggagatgcattcagcgactacaatcgatgtctacccgaagctgga |
114 |
Q |
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|||||||| ||| |||| ||||||| ||||||||||| |||| ||||||||||||||||||||||||||| || |||||||| |||| || ||||| || |
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| T |
1169626 |
gaaaatgaataacaatgctgaatatacacgaagatatgtccagggtgtggcagatggagatgcattcagccgctccaatcgatctctagccaaagcttga |
1169527 |
T |
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| Q |
115 |
aa |
116 |
Q |
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|| |
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| T |
1169526 |
aa |
1169525 |
T |
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