View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_325 (Length: 230)
Name: NF6866A_low_325
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_325 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 42447443 - 42447666
Alignment:
| Q |
1 |
aaagtgacttacaaacatttcggaaaacacatggaatacaaacttggaacagactaaaaataatgacaaaacatatcggaagaaatataacatgtaaatc |
100 |
Q |
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| T |
42447443 |
aaagtgacttacaaacatttcggaaaacacatggaatacaaacttggaacaaactaaaaataatgacaaaacatttcggaagaaatataacatgtaaatc |
42447542 |
T |
|
| Q |
101 |
atcaaaacaccagaagttccacaagaattagatgcccatacgagcactaatctcttgttaatcccagtggctcccagcgagcgaaagtcctttctgaact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42447543 |
atcaaaacaccagaagttccacaagaattagatgcccatacgagcactattctctcgttaatcccagtagctcccagcgagcgaaagtcctttctgaact |
42447642 |
T |
|
| Q |
201 |
agcaagtttttcacatgcacaaca |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
42447643 |
agcaagtttttcacatgcacaaca |
42447666 |
T |
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