View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_327 (Length: 230)
Name: NF6866A_low_327
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_327 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 43774741 - 43774969
Alignment:
| Q |
1 |
gatctagattttctgactagtatgaaagacctagagcatgatattgatagtaaacacttgacatccttgagagtgaattctctgcannnnnnnnnnnnnn |
100 |
Q |
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| T |
43774741 |
gatctagattttctgactagtatgaaaaacctagagcatgatattgatagtaaacacttgacatccttgagagtgaattctctgcattttatttttctct |
43774840 |
T |
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| Q |
101 |
nnnnnnggtcatatatgacaacaatgttacattttaaaatagattttaatctatagagatattcatataaggaaagtttgattacgcttgtcattctagt |
200 |
Q |
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| T |
43774841 |
ttttttggtcatatatgacaacaatgttacattttaaaatagatgttaatctatagagatattcatataaggaaagtttgattacgctggtcattctagt |
43774940 |
T |
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| Q |
201 |
caagtaaaagacaatgctttacatgtttga |
230 |
Q |
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| T |
43774941 |
c-agtaaaagagaatgctttacatgtttga |
43774969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 43773377 - 43773460
Alignment:
| Q |
2 |
atctagattttctgactagtatgaaagacctagagcatgatattgatagtaaacacttgacatccttgagagtgaattctctgc |
85 |
Q |
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| T |
43773377 |
atctacattttctgagtcgtatgaaaattctagaacataatgttgatggtaaatagttgacatccttgagggtgaattctctgc |
43773460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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