View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_33 (Length: 423)
Name: NF6866A_low_33
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 123 - 376
Target Start/End: Complemental strand, 21228844 - 21228591
Alignment:
| Q |
123 |
tagcgcaacaatatgacccagctaattgactcttgagacaaacttttacattacaccactgaataatattttgtagaatgcaaaactaaacaatccaacc |
222 |
Q |
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| T |
21228844 |
tagcacaacaatatgacccagctaattgactcttgagacaaacttttacattacaccactgaataatattttgtagaatgcaaaactaaacaatccatcc |
21228745 |
T |
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| Q |
223 |
atccattttgaaagttcttataaggtgtttcaagtttacaatattccattcaaatcaattactatataatactttatcagattacttgattttaacaata |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
21228744 |
atccattttgaaagttcttataaggtgtttcaagtttacaatattccattcaaatcaattactatataatactttatcagattacttgattttaactata |
21228645 |
T |
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| Q |
323 |
gatgtttgatatataaacaaacaaacatagagaggtttgtgtttggacatgtaa |
376 |
Q |
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| T |
21228644 |
gatgtttgatatataaacaaacaaacatagtgaggtttgtgtttggacaagtaa |
21228591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 7884084 - 7884190
Alignment:
| Q |
18 |
tcatcacgactagaaacaatgccattgacatccgcctcatgtcagtgcttcgtctttccgtcaattggttcatcatataca----aaattgttgtcttct |
113 |
Q |
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| T |
7884084 |
tcatcaccactagacacaatgccattctcatctggctcatggcagtggttcgtcttttcctcaattggttcatcatagacaagataaattgttgttttct |
7884183 |
T |
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| Q |
114 |
tcacaat |
120 |
Q |
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||||||| |
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| T |
7884184 |
tcacaat |
7884190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 10035758 - 10035699
Alignment:
| Q |
161 |
caaacttttacattacaccactgaataatattttgtagaatgcaaaactaaacaatccaa |
220 |
Q |
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| T |
10035758 |
caaacttttacattacaccagcgaataataaattgtagaatgcaaaccgaaccaatccaa |
10035699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 375 - 406
Target Start/End: Complemental strand, 21228566 - 21228535
Alignment:
| Q |
375 |
aaaatattttctgtaagaatgttggtgacatc |
406 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
21228566 |
aaaatattttctgtaagaatgttggtgacatc |
21228535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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