View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_337 (Length: 229)
Name: NF6866A_low_337
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_337 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 43558338 - 43558561
Alignment:
| Q |
2 |
ttgtaactttcaacatacaaagtagctacccaatcaactagaatcttaatgttgctcttaca--ttcccatacccctctttgttccaactccttagctcc |
99 |
Q |
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| T |
43558338 |
ttgtaactttcaacatccaaagtagctacccaatcaactagaatcttaatgttgctcttacacattcccatacacctctttgttccaactccttagctcc |
43558437 |
T |
|
| Q |
100 |
ctctttatggctctcatcttctctgccaagatgattcctatccaaccttgagggaaacaagagttcgcagcgccctccaccactcgacacaactctttgc |
199 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43558438 |
ctctttatggctctcatcttctctgccgagatgattcctatccaaccttgagggaaacaagagttcgaagcgccctccaccactcgacacaactctttgc |
43558537 |
T |
|
| Q |
200 |
tgactaaacaatgattattgaaac |
223 |
Q |
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||||||| |||||||||||||||| |
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| T |
43558538 |
tgactaaccaatgattattgaaac |
43558561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 2 - 164
Target Start/End: Complemental strand, 17734284 - 17734122
Alignment:
| Q |
2 |
ttgtaactttcaacatacaaagtagctacccaatcaactagaatcttaatgttgctcttacattcccatacccctctttgttccaactccttagctccct |
101 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| |||||||||||||||||| | | |||| ||||||||| |||| |||||||||||| |||||||||| |
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| T |
17734284 |
ttgtcactttcaacatccaaagtagctacccgatcaactagaatcttaattatccccttaagttcccatacacctccttgttccaactcgttagctccct |
17734185 |
T |
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| Q |
102 |
ctttatggctctcatcttctctgccaagatgattcctatccaaccttgagggaaacaagagtt |
164 |
Q |
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|||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||| |
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| T |
17734184 |
ctttatggctctcatcttctctcccaagatgaatcctatccaaacttgagggaaacaagagtt |
17734122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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