View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6866A_low_348 (Length: 228)
Name: NF6866A_low_348
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_348 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 52583678 - 52583873
Alignment:
| Q |
18 |
attctcaaagatagcttatgaaaacatttatatagttcataccaaaacaatttgatttttgttttaaaaataatttatacataaacacttatttgataaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52583678 |
attctcaaagatagcttatgaaaacatttatatagttcataccaaaacaatttgatttttgttttaaaaataatttatacataaacacttatttgataaa |
52583777 |
T |
|
| Q |
118 |
ctctagcactta------------attcgaatactactcaagtatgatgcaattttctttattagtactagtgaacataaaatcaggaagagaaga |
201 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52583778 |
ctctagcacttaattaagctttttattcgaatactactcaagtatgatgcaattttctttattagtactagtgaacataaaatcaggaagagaaga |
52583873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 19395154 - 19395216
Alignment:
| Q |
18 |
attctcaaagatagcttatgaaaacatttatatagttcataccaaaacaatttgatttttgttt |
81 |
Q |
| |
|
|||||| ||||||||| |||||||||||| ||||| | |||| |||||||||||||||| |||| |
|
|
| T |
19395154 |
attctccaagatagctaatgaaaacattt-tatagcttatacaaaaacaatttgattttcgttt |
19395216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 116
Target Start/End: Complemental strand, 38033934 - 38033892
Alignment:
| Q |
74 |
ttttgttttaaaaataatttatacataaacacttatttgataa |
116 |
Q |
| |
|
||||||| || |||||| ||||||||||||||||||||||||| |
|
|
| T |
38033934 |
ttttgttatataaataacttatacataaacacttatttgataa |
38033892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 116
Target Start/End: Complemental strand, 43133932 - 43133890
Alignment:
| Q |
74 |
ttttgttttaaaaataatttatacataaacacttatttgataa |
116 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||| |||||| |
|
|
| T |
43133932 |
ttttgttttagaaataatttatacataaatacttatgtgataa |
43133890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 5939051 - 5939015
Alignment:
| Q |
73 |
tttttgttttaaaaataatttatacataaacacttat |
109 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
5939051 |
tttttgttataaaaataacttatacataaacacttat |
5939015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University