View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_354 (Length: 227)
Name: NF6866A_low_354
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_354 |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 15 - 163
Target Start/End: Complemental strand, 41429542 - 41429394
Alignment:
| Q |
15 |
aaaaatataactcgtctttacaggaaaactcaaacattctatcattaaaactgtcaattagtaacaactcaatgcatttgggtgatcactgacgggtcac |
114 |
Q |
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| T |
41429542 |
aaaaatataactcgtctttacaggaaaactcaaacattctatcattaaaactgtcaatttgtaacaactcaatgcatttgggtgatcactgacgggtcac |
41429443 |
T |
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| Q |
115 |
tatattatagatcaggttggatttgccaaattaattacgaaccagtttt |
163 |
Q |
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| T |
41429442 |
tatattatagatcaggttggatttgcccaattaattacgaaccagtttt |
41429394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 41429369 - 41429309
Alignment:
| Q |
147 |
aattacgaaccagttttccatcttattttcgttcttttgattttttgacatatgaattttc |
207 |
Q |
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| T |
41429369 |
aattacgaaccagttttccatcttattttcgttcttttgattttttgacatatgaattttc |
41429309 |
T |
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