View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_36 (Length: 420)
Name: NF6866A_low_36
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Original strand, 219734 - 220134
Alignment:
| Q |
1 |
gagatgaaatttgattttaaggaatattaaatgtgtaggagtttgtgaaggcagtgattgcttatcagaaaaggttgaatactttaacatcaatgccaaa |
100 |
Q |
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| T |
219734 |
gagatgaaatttgattttgaggaatattaaatgtgtaggagtttgtgaaggcagtgattgcttttcagaaaaggctgaatactttaacatcagtgccaaa |
219833 |
T |
|
| Q |
101 |
acctatgaaactaaacaaggaaatcaagaacaaaaggaggattataatgcgtaccttttcagttgcaaaaaacctatacactaccggccgtgggaactgt |
200 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||| ||| |
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| T |
219834 |
acgtatgaaactaaacaaggaaatcaagaacaaaaggaggattataatgcgtagcttttcagttgcaaaaaaactatacactaccggtcgtgggaaatgt |
219933 |
T |
|
| Q |
201 |
tcttccaaagagcgggagcttgaagctggagccaaatttctcgaggtaacaaattataaacacaattaatcacaatcgcggatatagtcgcattcgcaaa |
300 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
219934 |
tcttccaaagagtgggagcttgaagctggagccaaatttctcgaggtaacaaattataaacacaattaatcacaatcgcagatatagtcgcattcgcgaa |
220033 |
T |
|
| Q |
301 |
gaattgcaattaatcgtggtttatataatctcaattatggttgtagaattataaaaattgacgatgttccaaatcgtcaattatgatagtgaatgagtta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
220034 |
gaattgcaattaatcgtggtttatataatctcaattatggttgtagaattataaaaattgacgatgttccaaatcgtcaattatgatagtgaatgagtta |
220133 |
T |
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| Q |
401 |
g |
401 |
Q |
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| T |
220134 |
g |
220134 |
T |
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