View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6866A_low_360 (Length: 226)

Name: NF6866A_low_360
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6866A_low_360
NF6866A_low_360
[»] chr1 (1 HSPs)
chr1 (19-222)||(36314605-36314808)
[»] chr8 (19 HSPs)
chr8 (19-188)||(19390543-19390712)
chr8 (19-201)||(19345129-19345311)
chr8 (31-201)||(19504032-19504202)
chr8 (33-188)||(19337427-19337582)
chr8 (19-212)||(19410740-19410933)
chr8 (19-212)||(19457759-19457952)
chr8 (19-212)||(19523126-19523319)
chr8 (19-179)||(19469524-19469684)
chr8 (19-179)||(19540448-19540608)
chr8 (19-179)||(19592090-19592250)
chr8 (31-188)||(19355445-19355602)
chr8 (20-157)||(19468610-19468747)
chr8 (20-157)||(19555531-19555668)
chr8 (19-175)||(19376577-19376733)
chr8 (19-170)||(19172821-19172972)
chr8 (19-170)||(19287674-19287825)
chr8 (19-157)||(19404708-19404846)
chr8 (33-145)||(19370934-19371046)
chr8 (33-145)||(19341154-19341266)
[»] chr6 (1 HSPs)
chr6 (16-170)||(19543023-19543177)


Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 36314808 - 36314605
Alignment:
Q  19 acatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagta 118  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  36314808 acatcaaaaaacgcgggaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccagtgaatgttcaacatatgtatcagta 36314709  T
Q  119 cattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagtttatacgatgggagctatcctcgaggggcaagttaacaagt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  36314708 cattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagtttatatgatgggagctatcctcgaagggcaagttaacaagt 36314609  T
Q  219 ggtg 222  Q
    ||||    
T  36314608 ggtg 36314605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 19390543 - 19390712
Alignment:
Q  19 acatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagta 118  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||  | ||||||||||||||  |||||||||||| ||| ||||| ||    
T  19390543 acatcaagaaacgcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggtttattcgagaacattccggtgaatgttcaacgtatatatcaata 19390642  T
Q  119 cattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagtttatacgatgg 188  Q
    ||||||||| ||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  19390643 cattattgtctctaacaaggatgaagattcttttgctttcgaagttaaagatgggaagtttatacgatgg 19390712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 19345129 - 19345311
Alignment:
Q  19 acatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagta 118  Q
    ||||||| ||| |||||| || |||||||||||| ||||||||||| ||||||||||| |||||||||||||| | ||| ||||||| ||| ||||||||    
T  19345129 acatcaagaaaagcggcatagcgtattggaaaagcggaaaacttaatagcaatggaatattcgagaacattcccacgaaagttcaacgtatatatcagta 19345228  T
Q  119 cattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagtttatacgatgggagctatcctcga 201  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||| | ||| ||||||    
T  19345229 cattattgtctctaacaagaatgaagattctttcgctttcgaagttaaagatgggaagtttgcacgatggcaactaacctcga 19345311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 31 - 201
Target Start/End: Complemental strand, 19504202 - 19504032
Alignment:
Q  31 gcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttc 130  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||| |  || ||||||| ||| ||||||||||||||||| ||    
T  19504202 gcggcaaagtgcattggaaaagcggaaaacttaaaagcaatggaatattcgagaacattcccacaaaagttcaacgtatatatcagtacattattgtctc 19504103  T
Q  131 taacaagaatgaagattctttcgcttttgaagttaaagatgggaagtttatacgatgggagctatcctcga 201  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||| | ||| ||||||    
T  19504102 taacaagaatgaagattctttcgctttcgaagttaaagatgggaagtttgcacgatggcaactaacctcga 19504032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 33 - 188
Target Start/End: Original strand, 19337427 - 19337582
Alignment:
Q  33 ggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttcta 132  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||   ||| ||||||| ||| || |||||||||||||| ||||    
T  19337427 ggcaaagtgcattggaaaagtggaaaactcaaaagcaatggaatgttcgagaacattcctgcgaaagttcaacgtatataccagtacattattgtgtcta 19337526  T
Q  133 acaagaatgaagattctttcgcttttgaagttaaagatgggaagtttatacgatgg 188  Q
    ||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  19337527 acaaggatgaagattcttttgcttttgaagttaaagatgggaaatttatacgatgg 19337582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 19410740 - 19410933
Alignment:
Q  19 acatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagta 118  Q
    ||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||    |||||||||  || |||||||||    
T  19410740 acatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggccaatgttcaaagtaggtatcagta 19410839  T
Q  119 cattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagtttatacgatgggagctatcctcgaggggcaagtta 212  Q
    ||||||||| ||||||||| |||||||||||||| | || |||||||||||||||||||||  || |||||| |||||||||| ||| ||||||    
T  19410840 cattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagatgggaagtttgcacaatgggaactatcctcgaaggggaagtta 19410933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 19457759 - 19457952
Alignment:
Q  19 acatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagta 118  Q
    ||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||    |||||||||  || |||||||||    
T  19457759 acatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggccaatgttcaaagtaggtatcagta 19457858  T
Q  119 cattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagtttatacgatgggagctatcctcgaggggcaagtta 212  Q
    ||||||||| ||||||||| |||||||||||||| | || |||||||||||||||||||||  || |||||| |||||||||| ||| ||||||    
T  19457859 cattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagatgggaagtttgcacaatgggaactatcctcgaaggggaagtta 19457952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 19523319 - 19523126
Alignment:
Q  19 acatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagta 118  Q
    ||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||    |||||||||  || |||||||||    
T  19523319 acatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggccaatgttcaaagtaggtatcagta 19523220  T
Q  119 cattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagtttatacgatgggagctatcctcgaggggcaagtta 212  Q
    ||||||||| ||||||||| |||||||||||||| | || |||||||||||||||||||||  || |||||| |||||||||| ||| ||||||    
T  19523219 cattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagatgggaagtttgcacaatgggaactatcctcgaaggggaagtta 19523126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 19469684 - 19469524
Alignment:
Q  19 acatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagta 118  Q
    ||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||    ||||||||| ||| |||||||||    
T  19469684 acatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggccaatgttcaaaataggtatcagta 19469585  T
Q  119 cattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagttt 179  Q
    ||||||||| ||||||||| |||||||||||||| | || |||||||||||||||||||||    
T  19469584 cattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagatgggaagttt 19469524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 19540608 - 19540448
Alignment:
Q  19 acatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagta 118  Q
    ||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||    ||||||||| ||| |||||||||    
T  19540608 acatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggccaatgttcaaaataggtatcagta 19540509  T
Q  119 cattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagttt 179  Q
    ||||||||| ||||||||| |||||||||||||| | || |||||||||||||||||||||    
T  19540508 cattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagatgggaagttt 19540448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 19592090 - 19592250
Alignment:
Q  19 acatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagta 118  Q
    ||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||    ||||||||| ||| |||||||||    
T  19592090 acatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggccaatgttcaaaataggtatcagta 19592189  T
Q  119 cattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagttt 179  Q
    ||||||||| ||||||||| |||||||||||||| | || |||||||||||||||||||||    
T  19592190 cattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagatgggaagttt 19592250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 31 - 188
Target Start/End: Original strand, 19355445 - 19355602
Alignment:
Q  31 gcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttc 130  Q
    ||||||||||| |||||||||| |||||||||| ||| |||||||| |||||||||||||||  ||| ||||||  ||| |||| |||||||||||| ||    
T  19355445 gcggcaaagtgcattggaaaagcggaaaacttagaagtaatggaatattcgagaacattccagcgaaagttcaaagtatatatcggtacattattgtgtc 19355544  T
Q  131 taacaagaatgaagattctttcgcttttgaagttaaagatgggaagtttatacgatgg 188  Q
    ||||||| ||||||||||||| ||||| |||||||| |||||||| ||||||||||||    
T  19355545 taacaaggatgaagattcttttgctttcgaagttaatgatgggaattttatacgatgg 19355602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 157
Target Start/End: Complemental strand, 19468747 - 19468610
Alignment:
Q  20 catcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtac 119  Q
    |||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||  ||||||||||||||||||||||||||    
T  19468747 catcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggtgaatgttcaacatatgtatcagtac 19468648  T
Q  120 attattgtttctaacaagaatgaagattctttcgcttt 157  Q
    |||||||| ||||||||  | |||||||||||| ||||    
T  19468647 attattgtctctaacaaagacgaagattctttcacttt 19468610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 157
Target Start/End: Complemental strand, 19555668 - 19555531
Alignment:
Q  20 catcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtac 119  Q
    |||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||  ||||||||||||||||||||||||||    
T  19555668 catcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggtgaatgttcaacatatgtatcagtac 19555569  T
Q  120 attattgtttctaacaagaatgaagattctttcgcttt 157  Q
    |||||||| ||||||||  | |||||||||||| ||||    
T  19555568 attattgtctctaacaaagacgaagattctttcacttt 19555531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 19376577 - 19376733
Alignment:
Q  19 acatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagta 118  Q
    ||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||    ||||||||| ||||||||| |||    
T  19376577 acatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggccaatgttcaaaatatgtatcggta 19376676  T
Q  119 cattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaa 175  Q
    ||| ||||| ||||||||| |||||||||| ||   ||||||| |||||||| ||||    
T  19376677 catcattgtctctaacaaggatgaagattcctttagttttgaaattaaagatcggaa 19376733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 19172972 - 19172821
Alignment:
Q  19 acatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagta 118  Q
    |||||||  ||||||||||||||||||||||||| ||||||||||| ||||||||| | ||| ||||||||| | |||| ||||||||| ||||||| ||    
T  19172972 acatcaagcaacgcggcaaagtgtattggaaaagcggaaaacttaacagcaatggattattcaagaacattctagtgaaagttcaacatgtgtatcaata 19172873  T
Q  119 cattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagat 170  Q
    ||||||||| ||||||||| ||||||| || ||| |||| ||| | ||||||    
T  19172872 cattattgtctctaacaaggatgaagactccttcactttcgaaatcaaagat 19172821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 19287674 - 19287825
Alignment:
Q  19 acatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagta 118  Q
    |||||||  ||||||||||||||||||||||||| ||||||| || | |||||||  | ||||||||||||||| |||| ||||||| | ||||||| ||    
T  19287674 acatcaagcaacgcggcaaagtgtattggaaaagcggaaaacgtagacgcaatggtttattcgagaacattccagtgaaagttcaacgtgtgtatcaata 19287773  T
Q  119 cattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagat 170  Q
    ||||||||| ||||||||| ||||||| || ||| |||| ||| | ||||||    
T  19287774 cattattgtctctaacaaggatgaagactccttcactttcgaaatcaaagat 19287825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 157
Target Start/End: Original strand, 19404708 - 19404846
Alignment:
Q  19 acatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagta 118  Q
    ||||||| ||| | |||||||||||||||||||| ||||||||||||||| ||||| | |||||||| |||||    |||||||||  ||||||||| ||    
T  19404708 acatcaagaaaagaggcaaagtgtattggaaaagcggaaaacttaaaagcgatggattattcgagaatattccggccaatgttcaaactatgtatcaata 19404807  T
Q  119 cattattgtttctaacaagaatgaagattctttcgcttt 157  Q
    || |||||| ||||||||| |||||||||||||| ||||    
T  19404808 cactattgtctctaacaaggatgaagattctttcacttt 19404846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 19370934 - 19371046
Alignment:
Q  33 ggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttcta 132  Q
    ||||||||| ||||||||||||||||||||| |||||||||| | |||||||||||||||  |||||| |||||| ||||||  ||||| ||||| ||||    
T  19370934 ggcaaagtgcattggaaaagtggaaaacttagaagcaatggattattcgagaacattccagagaatgtccaacatgtgtatcgatacatgattgtctcta 19371033  T
Q  133 acaagaatgaaga 145  Q
    ||||  |||||||    
T  19371034 acaaagatgaaga 19371046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 19341154 - 19341266
Alignment:
Q  33 ggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttcta 132  Q
    ||||||||| ||||||||||||||||||||  |||||||||| | ||||||||||||| |  |||||| |||||| ||||||  ||||| ||||| ||||    
T  19341154 ggcaaagtgcattggaaaagtggaaaacttggaagcaatggattattcgagaacattctagagaatgtccaacatgtgtatcgatacatgattgtctcta 19341253  T
Q  133 acaagaatgaaga 145  Q
    ||||  |||||||    
T  19341254 acaaagatgaaga 19341266  T

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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 19543023 - 19543177
Alignment:
Q  16 tggacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatca 115  Q
    |||| ||||| ||| |||||||||||||||||||||| |||||||||| ||| |||||  | |||| |||||| ||   ||||||||||| | ||||| |    
T  19543023 tggaaatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttagaagaaatgggttattcgtgaacataccggcgaatgttcaacgtgtgtatga 19543122  T
Q  116 gtacattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagat 170  Q
     ||||||||||||||||| ||  |||||||||| ||  ||||| || ||||||||    
T  19543123 atacattattgtttctaagaaagatgaagattcctttacttttaaaattaaagat 19543177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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