View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_361 (Length: 226)
Name: NF6866A_low_361
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_361 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 6024293 - 6024486
Alignment:
| Q |
17 |
ggaacaagggaacctattgtgtatcaacaacattgatcctctattatcagccgattatatgatgcaaccgactacatataattatatattccaa-ccctc |
115 |
Q |
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| T |
6024293 |
ggaacaagggaacctattgtgtatcaacaacattgatcctctattatcagccgattatatgatgcaaccgactacatataattatatattccaacccctc |
6024392 |
T |
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| Q |
116 |
cctatgtttcgattctttccaacgatttttctttaaccgaagttcattaaccacatcattatattcataagcacattaatcgaactattcataa |
209 |
Q |
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| T |
6024393 |
cctatgtttcgattctttccagcgatttttctttaactgaatttcattaaccacatcattatattcataaacacattaattgaactattcataa |
6024486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 90
Target Start/End: Complemental strand, 6024273 - 6024224
Alignment:
| Q |
41 |
caacaacattgatcctctattatcagccgattatatgatgcaaccgacta |
90 |
Q |
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| T |
6024273 |
caacaacattgatcctctattatcagccgattatatggtgcaaccgacta |
6024224 |
T |
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