View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_369 (Length: 223)
Name: NF6866A_low_369
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_369 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 8638094 - 8637920
Alignment:
| Q |
1 |
tataagctttggaactcaaattaaagcaatcttgttaagttcagaaccaaaaagactgattgcaatgaagtagtgcatctttatgagttcattgtcgttc |
100 |
Q |
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| T |
8638094 |
tataagctttggaactcaaattaaagcaatcttgttaagttcagaaccaaaaggactgattgcaatgaagtagtgcatctttatgagttcattgtcgttc |
8637995 |
T |
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| Q |
101 |
ttggnnnnnnnnaacaggttgtcgttgttctttgcttaatcaaattatatgcctatatatatagcttgatgagtcccaa |
179 |
Q |
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| T |
8637994 |
ttggttttttttaacaggttgtcgttgttctttgcgtaatcaaattatatgcc----tatatagcttgatgagtcccaa |
8637920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 35111555 - 35111774
Alignment:
| Q |
1 |
tataagctttggaactcaaattaaagcaatcttgttaagttcagaaccaaaaagactgattgcaatgaagtagtgcatctttatgagttcattgtcgttc |
100 |
Q |
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| T |
35111555 |
tataagctttggaacacaacttgaagcaatcttgttaagttcagaaccaaaaggagtgattgcaatgaagcattgtacctttatgagttcattgttgttc |
35111654 |
T |
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| Q |
101 |
ttgg--nnnnnnnnaacaggttgtcgttgttctttgcttaatcaaat--tatatgcctatatatatagcttgatgagtcccaattgaaaagggcagcttc |
196 |
Q |
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| T |
35111655 |
ttggcttttttttgaacaggtt---gttgttcttggcttaatcgaattctatatgc----ttatatagcttgatgagtcccaattgaaaagggcaacttc |
35111747 |
T |
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| Q |
197 |
tagaaaatttaacttcataagccctca |
223 |
Q |
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| T |
35111748 |
tagaaaatttaacttcataagccctca |
35111774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 6757839 - 6757736
Alignment:
| Q |
1 |
tataagctttggaactcaaattaaagcaatcttgttaagttcagaaccaaaaagactgattgcaatgaagtagtgcatctttatgagttcattgtcgttc |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| | ||| ||||| || ||||||||||||| ||||||| ||||||||||||||||| |||| |
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| T |
6757839 |
tataagctttggaactcaaattgaagcaatcttgttaagtactgaatcaaaaggagtgattgcaatgaaatagtgcacctttatgagttcattgtagttc |
6757740 |
T |
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| Q |
101 |
ttgg |
104 |
Q |
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|||| |
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| T |
6757739 |
ttgg |
6757736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 6757716 - 6757660
Alignment:
| Q |
158 |
tatatagcttgatgagtcccaattgaaaagggcagcttctagaaaatttaacttcat |
214 |
Q |
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| T |
6757716 |
tatatagcttgatgagtcccaattgagaaaggtaacttctataaaatttaacttcat |
6757660 |
T |
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