View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6866A_low_375 (Length: 222)

Name: NF6866A_low_375
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6866A_low_375
NF6866A_low_375
[»] chr6 (12 HSPs)
chr6 (1-216)||(33059080-33059295)
chr6 (9-216)||(33287059-33287266)
chr6 (1-216)||(31561157-31561372)
chr6 (1-216)||(33402131-33402346)
chr6 (1-216)||(33411470-33411685)
chr6 (1-216)||(33389589-33389804)
chr6 (1-215)||(9168289-9168506)
chr6 (10-216)||(33273309-33273515)
chr6 (15-216)||(33264166-33264367)
chr6 (9-216)||(33306003-33306210)
chr6 (1-216)||(33642950-33643165)
chr6 (101-216)||(28869219-28869334)
[»] chr2 (1 HSPs)
chr2 (9-216)||(17439184-17439391)
[»] scaffold0428 (1 HSPs)
scaffold0428 (15-216)||(8277-8478)
[»] chr4 (8 HSPs)
chr4 (102-200)||(31527936-31528034)
chr4 (144-200)||(31019327-31019383)
chr4 (144-200)||(31158776-31158832)
chr4 (136-200)||(31477454-31477518)
chr4 (144-200)||(31029208-31029264)
chr4 (145-196)||(31161187-31161238)
chr4 (1-193)||(31149882-31150071)
chr4 (1-41)||(31158932-31158972)


Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 33059295 - 33059080
Alignment:
Q  1 ttgaaagcgtatggagtggatgtagtttacaaagtttcactattggattggaatgaagctcacatgttattttgtcgaaaagctttcaaagatgagagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  33059295 ttgaaagcgtatggagtggatgtagtttacaaagtttcactattggattggaatgaagctcacatgttattttgtcgaaaagctttcaaagatgagaaaa 33059196  T
Q  101 ttattatgagtaattatcaaaatttggtagatcagatactacattatgctaaaggtctaccactagcaattaaaggattgggctcgtttttgtttggtcg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33059195 ttattatgagtaattatcaaaatttggtagatcagatactacattatgctaaaggtctaccactagcaattaaagtattgggctcgtttttgtttggtcg 33059096  T
Q  201 taatgtgactgaatgg 216  Q
    ||||||||||||||||    
T  33059095 taatgtgactgaatgg 33059080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 9 - 216
Target Start/End: Complemental strand, 33287266 - 33287059
Alignment:
Q  9 gtatggagtggatgtagtttacaaagtttcactattggattggaatgaagctcacatgttattttgtcgaaaagctttcaaagatgagagaattattatg 108  Q
    |||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  33287266 gtatggagtggatgtagtctacaaagttccactcttggattggaatgaagctcacatgttattttgtcgaaaagctttcaaagaagagaaaattattatg 33287167  T
Q  109 agtaattatcaaaatttggtagatcagatactacattatgctaaaggtctaccactagcaattaaaggattgggctcgtttttgtttggtcgtaatgtga 208  Q
    || |||||| ||| ||||||| || |||||||  |||||||||| ||||||||  |||||||||||| ||||||||| ||||||||||||||||||||||    
T  33287166 agaaattatgaaagtttggtatatgagatactggattatgctaatggtctaccgttagcaattaaagtattgggctcatttttgtttggtcgtaatgtga 33287067  T
Q  209 ctgaatgg 216  Q
    | ||||||    
T  33287066 cggaatgg 33287059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 31561157 - 31561372
Alignment:
Q  1 ttgaaagcgtatggagtggatgtagtttacaaagtttcactattggattggaatgaagctcacatgttattttgtcgaaaagctttcaaagatgagagaa 100  Q
    ||||||| |||||||||||||||||||||||||||| |||| ||| ||  |   ||  ||||||||||||||||||||||||||||||||| ||||| ||    
T  31561157 ttgaaagagtatggagtggatgtagtttacaaagttccacttttgaatcaggccgagtctcacatgttattttgtcgaaaagctttcaaagttgagaaaa 31561256  T
Q  101 ttattatgagtaattatcaaaatttggtagatcagatactacattatgctaaaggtctaccactagcaattaaaggattgggctcgtttttgtttggtcg 200  Q
    ||||||||||| ||||||||||||||| |||| |||||||  ||||||||||||||||||| |||||||||| || ||||||||| ||||||||||||||    
T  31561257 ttattatgagtgattatcaaaatttggcagatgagatactgaattatgctaaaggtctaccgctagcaattacagtattgggctcatttttgtttggtcg 31561356  T
Q  201 taatgtgactgaatgg 216  Q
    ||||||||||||||||    
T  31561357 taatgtgactgaatgg 31561372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 33402346 - 33402131
Alignment:
Q  1 ttgaaagcgtatggagtggatgtagtttacaaagtttcactattggattggaatgaagctcacatgttattttgtcgaaaagctttcaaagatgagagaa 100  Q
    ||||||| ||||| |||||| |||||||||||||||  ||| ||| ||||||  ||| |||| | |||||||||||||||||||||||||| ||||| ||    
T  33402346 ttgaaagagtatgaagtggacgtagtttacaaagttcaacttttgaattggaccgaatctcataagttattttgtcgaaaagctttcaaagctgagaaaa 33402247  T
Q  101 ttattatgagtaattatcaaaatttggtagatcagatactacattatgctaaaggtctaccactagcaattaaaggattgggctcgtttttgtttggtcg 200  Q
    ||||||||||||||||||||||||||| | || ||||| |  |||||||||  ||||||||||| |||||||||| ||||||||| |||||||| |||||    
T  33402246 ttattatgagtaattatcaaaatttggcaaataagatattgaattatgctagtggtctaccacttgcaattaaagtattgggctcatttttgttcggtcg 33402147  T
Q  201 taatgtgactgaatgg 216  Q
    ||||||||||||||||    
T  33402146 taatgtgactgaatgg 33402131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 33411685 - 33411470
Alignment:
Q  1 ttgaaagcgtatggagtggatgtagtttacaaagtttcactattggattggaatgaagctcacatgttattttgtcgaaaagctttcaaagatgagagaa 100  Q
    ||||||| ||| |||||||||||||||||||||||| ||||  || || | |  ||  || ||  |||||||||||||||||||||||||| ||||| ||    
T  33411685 ttgaaagagtacggagtggatgtagtttacaaagttccacttatgaatagtacagattcttacgagttattttgtcgaaaagctttcaaagttgagaaaa 33411586  T
Q  101 ttattatgagtaattatcaaaatttggtagatcagatactacattatgctaaaggtctaccactagcaattaaaggattgggctcgtttttgtttggtcg 200  Q
    ||||||||||| ||||||||||||||| | || |||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||     
T  33411585 ttattatgagtgattatcaaaatttggcaaatgagatactagattatgctaaaggtctaccactagcaattaaagtattgggctcatttttgtttggtca 33411486  T
Q  201 taatgtgactgaatgg 216  Q
    || |||| ||||||||    
T  33411485 tagtgtggctgaatgg 33411470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 33389804 - 33389589
Alignment:
Q  1 ttgaaagcgtatggagtggatgtagtttacaaagtttcactattggattggaatgaagctcacatgttattttgtcgaaaagctttcaaagatgagagaa 100  Q
    ||||||| |||||||||||| ||||||||||||||| |||| ||| || |||  ||  |||||| ||||||||||| ||||||||||||| |||||| ||    
T  33389804 ttgaaagagtatggagtggacgtagtttacaaagttccacttttgaatcggaccgattctcacaagttattttgtcaaaaagctttcaaacatgagaaaa 33389705  T
Q  101 ttattatgagtaattatcaaaatttggtagatcagatactacattatgctaaaggtctaccactagcaattaaaggattgggctcgtttttgtttggtcg 200  Q
    |||||||||||| ||| ||||||||||    | |||||||   ||||||||| ||||| |||||||||||||||| ||||||||| ||||||||||||||    
T  33389704 ttattatgagtagttaccaaaatttggattttgagatactgagttatgctaatggtcttccactagcaattaaagtattgggctcatttttgtttggtcg 33389605  T
Q  201 taatgtgactgaatgg 216  Q
    ||||||||||||||||    
T  33389604 taatgtgactgaatgg 33389589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 9168506 - 9168289
Alignment:
Q  1 ttgaaagcgtatggagt---ggatgtagtttacaaagtttcactattggattggaatgaagctcacatgttattttgtcgaaaagctttcaaagatgaga 97  Q
    ||||||| |||||||||   ||||||||||||||||||| |||| ||| ||  || |||| |||||  |||||||| ||||||||||||||||  |||||    
T  9168506 ttgaaagagtatggagtactggatgtagtttacaaagttccactcttgaatcagactgaatctcactagttattttatcgaaaagctttcaaacttgaga 9168407  T
Q  98 gaattattatgagtaattatcaaaatttggtagatcagatactacattatgctaaaggtctaccactagcaattaaaggattgggctcgtttttgtttgg 197  Q
     || |||||  ||||||||||||||||||| | || |||||||  ||||||| |||||||||||| |||||||||||| ||||||||| |||||||||||    
T  9168406 aaactattagcagtaattatcaaaatttggcatatgagatacttaattatgcgaaaggtctaccattagcaattaaagtattgggctcatttttgtttgg 9168307  T
Q  198 tcgtaatgtgactgaatg 215  Q
    ||||||||||||||||||    
T  9168306 tcgtaatgtgactgaatg 9168289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 10 - 216
Target Start/End: Complemental strand, 33273515 - 33273309
Alignment:
Q  10 tatggagtggatgtagtttacaaagtttcactattggattggaatgaagctcacatgttattttgtcgaaaagctttcaaagatgagagaattattatga 109  Q
    ||||||||||||| ||||||||||||| |||| ||| ||||||  ||  |||||| ||||||||||| |||||||||||||  ||||| | |||||||||    
T  33273515 tatggagtggatgcagtttacaaagttccacttttgaattggacagattctcacaagttattttgtcaaaaagctttcaaatttgagaaagttattatga 33273416  T
Q  110 gtaattatcaaaatttggtagatcagatactacattatgctaaaggtctaccactagcaattaaaggattgggctcgtttttgtttggtcgtaatgtgac 209  Q
    |||||||| |||| || |   || |||| ||| |||||||||| ||||||||||||||||||| || ||||||||| |||||||||||||||||||||||    
T  33273415 gtaattatgaaaacttagcgtatgagattctagattatgctaatggtctaccactagcaattatagtattgggctcatttttgtttggtcgtaatgtgac 33273316  T
Q  210 tgaatgg 216  Q
    |||||||    
T  33273315 tgaatgg 33273309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 33264367 - 33264166
Alignment:
Q  15 agtggatgtagtttacaaagtttcactattggattggaatgaagctcacatgttattttgtcgaaaagctttcaaagatgagagaattattatgagtaat 114  Q
    |||||||||||||||||||||  ||||  || |||||   |||||||||| |||||||||| ||||||||||||||| ||||| ||||||||||||||||    
T  33264367 agtggatgtagtttacaaagtcccacttctgaattgggccgaagctcacaagttattttgtagaaaagctttcaaagctgagaaaattattatgagtaat 33264268  T
Q  115 tatcaaaatttggtagatcagatactacattatgctaaaggtctaccactagcaattaaaggattgggctcgtttttgtttggtcgtaatgtgactgaat 214  Q
    ||| ||||||||| | || ||||| |    |||||||| |||||||||||||||||||||| |||||| || | ||||||||||||||||||||||||||    
T  33264267 tataaaaatttggcaaatgagatattgagatatgctaatggtctaccactagcaattaaagtattgggttcatatttgtttggtcgtaatgtgactgaat 33264168  T
Q  215 gg 216  Q
    ||    
T  33264167 gg 33264166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 9 - 216
Target Start/End: Complemental strand, 33306210 - 33306003
Alignment:
Q  9 gtatggagtggatgtagtttacaaagtttcactattggattggaatgaagctcacatgttattttgtcgaaaagctttcaaagatgagagaattattatg 108  Q
    |||||||||||||||| ||||||||||| |||| ||| ||  |   ||| |||||| |||||||||||||||||||||||||  |||||  |||||  ||    
T  33306210 gtatggagtggatgtattttacaaagttccactcttgaatatggccgaatctcacaagttattttgtcgaaaagctttcaaacttgagaacattatattg 33306111  T
Q  109 agtaattatcaaaatttggtagatcagatactacattatgctaaaggtctaccactagcaattaaaggattgggctcgtttttgtttggtcgtaatgtga 208  Q
     |||||||||||||||||| |||| ||||| |   ||||||||| |||||||| |||||||||| |  ||||||||| ||||||||||||||||||||||    
T  33306110 ggtaattatcaaaatttggcagatgagatattgagttatgctaatggtctacccctagcaattacaatattgggctcatttttgtttggtcgtaatgtga 33306011  T
Q  209 ctgaatgg 216  Q
    ||||||||    
T  33306010 ctgaatgg 33306003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 33642950 - 33643165
Alignment:
Q  1 ttgaaagcgtatggagtggatgtagtttacaaagtttcactattggattggaatgaagctcacatgttattttgtcgaaaagctttcaaagatgagagaa 100  Q
    ||||||| |||||||||||||||||||||||||||| |||| ||| ||  ||  ||| ||  || ||| |||||||||||||||||||||  ||||| ||    
T  33642950 ttgaaagtgtatggagtggatgtagtttacaaagttccacttttgaatcagacagaatcttgcaagttgttttgtcgaaaagctttcaaacttgagaaaa 33643049  T
Q  101 ttattatgagtaattatcaaaatttggtagatcagatactacattatgctaaaggtctaccactagcaattaaaggattgggctcgtttttgtttggtcg 200  Q
     ||||||||||||||||| ||| |||| |  | |  |||||| ||||||||| ||||||||||||||||||| |  |||| |||| ||||||||||||||    
T  33643050 ctattatgagtaattatcgaaagttggcatctgatgtactacgttatgctaatggtctaccactagcaattacaatattgagctcatttttgtttggtcg 33643149  T
Q  201 taatgtgactgaatgg 216  Q
    |||||| |||||||||    
T  33643150 taatgtaactgaatgg 33643165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 101 - 216
Target Start/End: Original strand, 28869219 - 28869334
Alignment:
Q  101 ttattatgagtaattatcaaaatttggtagatcagatactacattatgctaaaggtctaccactagcaattaaaggattgggctcgtttttgtttggtcg 200  Q
    |||| |||||||||||||||||||||| | ||  ||||||  ||||||||||||||||||| |||||||||| |  ||||  ||| | ||||||||||||    
T  28869219 ttatcatgagtaattatcaaaatttggcaaatgtgatactggattatgctaaaggtctaccgctagcaattacaatattgtactcatatttgtttggtcg 28869318  T
Q  201 taatgtgactgaatgg 216  Q
    ||||||||||||||||    
T  28869319 taatgtgactgaatgg 28869334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 9 - 216
Target Start/End: Original strand, 17439184 - 17439391
Alignment:
Q  9 gtatggagtggatgtagtttacaaagtttcactattggattggaatgaagctcacatgttattttgtcgaaaagctttcaaagatgagagaattattatg 108  Q
    |||||||||||||||||||||||||||| |||| ||| ||||||  ||  || ||| |||||||||||||||||||||||||| |||||  |||||||||    
T  17439184 gtatggagtggatgtagtttacaaagttccacttttgaattggagagattcttacaagttattttgtcgaaaagctttcaaagttgagaacattattatg 17439283  T
Q  109 agtaattatcaaaatttggtagatcagatactacattatgctaaaggtctaccactagcaattaaaggattgggctcgtttttgtttggtcgtaatgtga 208  Q
    ||||||||||||||||||| | || |||||||    |||||||| |||||||||||||||||||||| | ||||||| |||||||||||| |||||||||    
T  17439284 agtaattatcaaaatttggcaaatgagatactgagatatgctaatggtctaccactagcaattaaagtaatgggctcatttttgtttggttgtaatgtga 17439383  T
Q  209 ctgaatgg 216  Q
    ||||||||    
T  17439384 ctgaatgg 17439391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 8478 - 8277
Alignment:
Q  15 agtggatgtagtttacaaagtttcactattggattggaatgaagctcacatgttattttgtcgaaaagctttcaaagatgagagaattattatgagtaat 114  Q
    |||||||||||||||||||||| |||| ||||||||||  ||  |||||| ||||||||||| |||||||||||||  ||||| |||||| ||||  |||    
T  8478 agtggatgtagtttacaaagttccactgttggattggaccgagtctcacaagttattttgtcaaaaagctttcaaacttgagaaaattatcatgaaaaat 8379  T
Q  115 tatcaaaatttggtagatcagatactacattatgctaaaggtctaccactagcaattaaaggattgggctcgtttttgtttggtcgtaatgtgactgaat 214  Q
    ||||||||||||| | || |||||||  |||| ||||| ||||||||||||||||||| || ||||||||| ||||||| ||||||||||||||||||||    
T  8378 tatcaaaatttggcatatgagatactgaattacgctaatggtctaccactagcaattacagtattgggctcatttttgtctggtcgtaatgtgactgaat 8279  T
Q  215 gg 216  Q
    ||    
T  8278 gg 8277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 200
Target Start/End: Complemental strand, 31528034 - 31527936
Alignment:
Q  102 tattatgagtaattatcaaaatttggtagatcagatactacattatgctaaaggtctaccactagcaattaaaggattgggctcgtttttgtttggtcg 200  Q
    |||| ||||||||||| |  | |||||| || |||||||| |||||||||| ||  |||||||||| ||||||| ||||||||| ||||||||||||||    
T  31528034 tattttgagtaattatgacgagttggtatatgagatactaaattatgctaatggcttaccactagcgattaaagcattgggctcatttttgtttggtcg 31527936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 31019383 - 31019327
Alignment:
Q  144 ttatgctaaaggtctaccactagcaattaaaggattgggctcgtttttgtttggtcg 200  Q
    |||||| || || ||||||||||||||||||| ||||||||| ||||||||||||||    
T  31019383 ttatgccaatggcctaccactagcaattaaagtattgggctcatttttgtttggtcg 31019327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 31158832 - 31158776
Alignment:
Q  144 ttatgctaaaggtctaccactagcaattaaaggattgggctcgtttttgtttggtcg 200  Q
    ||||||||| |||||||| ||||||||||||| |||||| || ||||||||||||||    
T  31158832 ttatgctaatggtctaccgctagcaattaaagtattgggatcatttttgtttggtcg 31158776  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 31477454 - 31477518
Alignment:
Q  136 atactacattatgctaaaggtctaccactagcaattaaaggattgggctcgtttttgtttggtcg 200  Q
    |||||||||||||| || || |||||||| |||||||||| |||||| || ||||||||||||||    
T  31477454 atactacattatgccaatggcctaccacttgcaattaaagtattgggttcatttttgtttggtcg 31477518  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 31029264 - 31029208
Alignment:
Q  144 ttatgctaaaggtctaccactagcaattaaaggattgggctcgtttttgtttggtcg 200  Q
    |||||| || || ||||||||||| ||||||| ||||||||| ||||||||||||||    
T  31029264 ttatgccaatggcctaccactagctattaaagtattgggctcatttttgtttggtcg 31029208  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 196
Target Start/End: Complemental strand, 31161238 - 31161187
Alignment:
Q  145 tatgctaaaggtctaccactagcaattaaaggattgggctcgtttttgtttg 196  Q
    |||||||| ||  |||||||||||||||||| ||||||||| ||||||||||    
T  31161238 tatgctaatggcttaccactagcaattaaagtattgggctcttttttgtttg 31161187  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 31150071 - 31149882
Alignment:
Q  1 ttgaaagcgtatggagtggatgtagtttacaaagtttcactattggattggaatgaagctcacatgttattttgtcgaaaagctttcaaagatgagagaa 100  Q
    ||||||| ||||||||||||||| |||||||||||| ||||  || || ||| |||  |||     |||||| |||||||||||||||||  |||         
T  31150071 ttgaaagagtatggagtggatgttgtttacaaagttccactcctgaatcggactgactctcttcaattatttagtcgaaaagctttcaaacttgatca-- 31149974  T
Q  101 ttattatgagtaattatcaaaatttggtagatcagatactacattatgctaaaggtctaccactagcaattaaaggattgggctcgtttttgt 193  Q
     ||||||||||| |||| | || |||| |  | ||||||||   |||||||| || ||||| ||||||||||||| ||| |||||||||||||    
T  31149973 -tattatgagtagttatgataagttggcatctgagatactaaggtatgctaatggcctacctctagcaattaaagtattaggctcgtttttgt 31149882  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 31158972 - 31158932
Alignment:
Q  1 ttgaaagcgtatggagtggatgtagtttacaaagtttcact 41  Q
    ||||||| ||||||||| |||||||||||||||||| ||||    
T  31158972 ttgaaagagtatggagttgatgtagtttacaaagttccact 31158932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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