View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_379 (Length: 220)
Name: NF6866A_low_379
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_379 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 19437956 - 19438175
Alignment:
| Q |
1 |
gacctcaaatatcttcagtttttctgttaccaaaaagagtttcatgttcaactagttatggattgttgaagtctagaacacttcaacatgagtctataaa |
100 |
Q |
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| T |
19437956 |
gacctcaaatatcttcagtttttctgttaccaaaaagagtttcaagttcaactagttatggattgttgaagtctagaacacttcaacatgagtctataaa |
19438055 |
T |
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| Q |
101 |
ttcaagcttggtgttctctccactggtgaagaaggcctttggaataaatcaaagaaggtttcctgttgttgcagccttagcagcagatgctgatgatagt |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
19438056 |
ttcaagcttggtgttctctccattggtgaagaaggcctttggagtaaatcaaagaaggtttccagttgttacagccttagcagcagatgctgatgatagt |
19438155 |
T |
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| Q |
201 |
gaaattgaaatctctaatgg |
220 |
Q |
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|||||||||||||||||||| |
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| T |
19438156 |
gaaattgaaatctctaatgg |
19438175 |
T |
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