View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_38 (Length: 418)
Name: NF6866A_low_38
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 33498965 - 33499377
Alignment:
| Q |
1 |
tttggtgttagagaaacataagattgatgttatttctgccaacattatgtgcaatgcaaatggaaacttctacatgattatggcccatgtaagtttcaaa |
100 |
Q |
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| T |
33498965 |
tttggtgttggagaaacataagattgatgttatttctgccaacattatgtgcaatgcaaatggaaacttctacatgattatggcccatgtaagtttcaaa |
33499064 |
T |
|
| Q |
101 |
ccttctcttctcttgagtagtgtgagtgcgaatagctcaattgaattgtgttgattttgcaggcaaaacaagcttcacttggcgcaaactcgatggagga |
200 |
Q |
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| T |
33499065 |
ccttctcttctcttgagtagtgtgagagcgaatagctcaattgaattgtgttgattttgcaggcaaaacaagcttcacttggcgcaaactcgatggagga |
33499164 |
T |
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| Q |
201 |
aacttacaagcaagcagctttagaaattatgacgaggatcgcttaaaattttgatcataaaacttgtcttttcattccgtatgaattttattttcc-tcc |
299 |
Q |
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| T |
33499165 |
aacttacaagcaagcagctttagaaattatgacgaggatcgcttaaaattttgatcataaaacttgtcttttcattccgtatgaattttattttccttcc |
33499264 |
T |
|
| Q |
300 |
tatcggaaacagttagaattggccatctttgatggtcctatgagacattttatggtgtttaaactagttaaattatttgctttttgtgtttgcttttcca |
399 |
Q |
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| T |
33499265 |
gatcggaaacagttagaattggccatctttgatggtcctatgagacattttatggtgtttaaactagttaaattatttgctttttgtgtttgcttttcta |
33499364 |
T |
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| Q |
400 |
atattgtaaactg |
412 |
Q |
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| T |
33499365 |
atattgtaaactg |
33499377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 33485754 - 33485867
Alignment:
| Q |
1 |
tttggtgttagagaaacataagattgatgttatttctgccaacattatgtgcaatgcaaatggaaacttctacatgattatggcccatgtaagtttcaaa |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33485754 |
tttggtgttggagaaacataagattgatgttatttctgccaacattatgtgcaatgcaaatggaaacttctacatgattatggcccatgtaagtttcaaa |
33485853 |
T |
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| Q |
101 |
ccttctcttctctt |
114 |
Q |
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|||||||| ||||| |
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| T |
33485854 |
ccttctctcctctt |
33485867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 111 - 265
Target Start/End: Original strand, 33486058 - 33486212
Alignment:
| Q |
111 |
tcttgagtagtgtgagtgcgaatagctcaattgaattgtgttgattttgcaggcaaaacaagcttcacttggcgcaaactcgatggaggaaacttacaag |
210 |
Q |
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| T |
33486058 |
tcttgagtagtacgagtgtgaatagctcaattgaattgtcttaattttgcaggcaaaacaagcttcacatgacgcaaattcaatgaaggaaacatacaag |
33486157 |
T |
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| Q |
211 |
caagcagctttagaaattatgacgaggatcgcttaaaattttgatcataaaactt |
265 |
Q |
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| T |
33486158 |
catgcggctggagaaattatgatgtggatcgcttagaattttgatcataaaactt |
33486212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 326 - 398
Target Start/End: Original strand, 33486210 - 33486284
Alignment:
| Q |
326 |
ctttgatggtcctatgagacatttt-atggtgtttaaactagtta-aattatttgctttttgtgtttgcttttcc |
398 |
Q |
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|||||||||||||| ||| ||||| |||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
33486210 |
ctttgatggtcctaagagcaatttttatggtgtttaaactagttttaattatatgctttttgtgtttgcttttcc |
33486284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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