View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6866A_low_384 (Length: 217)

Name: NF6866A_low_384
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6866A_low_384
NF6866A_low_384
[»] chr6 (7 HSPs)
chr6 (29-197)||(28097221-28097389)
chr6 (70-185)||(29827263-29827378)
chr6 (32-98)||(28186633-28186699)
chr6 (32-95)||(28326717-28326780)
chr6 (32-95)||(28504353-28504416)
chr6 (32-98)||(28296617-28296683)
chr6 (32-98)||(28515390-28515456)
[»] chr2 (1 HSPs)
chr2 (32-182)||(3280898-3281048)
[»] chr5 (1 HSPs)
chr5 (32-197)||(16692106-16692271)
[»] scaffold0019 (1 HSPs)
scaffold0019 (34-197)||(57072-57235)
[»] chr8 (1 HSPs)
chr8 (160-197)||(31906421-31906458)
[»] chr4 (1 HSPs)
chr4 (32-104)||(5089821-5089893)


Alignment Details
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 29 - 197
Target Start/End: Complemental strand, 28097389 - 28097221
Alignment:
Q  29 ctgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatattaaagaattcc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  28097389 ctgctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatatgaaagaattcc 28097290  T
Q  129 tagtgaagagattcaaaaaatacttcgtgtgagttttgatgctttggaggaagatgagaggagtgtttt 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28097289 tagtgaagagattcaaaaaatacttcgtgtgagttttgatgctttggaggaagatgagaggagtgtttt 28097221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 70 - 185
Target Start/End: Original strand, 29827263 - 29827378
Alignment:
Q  70 ttgtatggaaagcatatagaagaatggaattctttgttggatcgatattaaagaattcctagtgaagagattcaaaaaatacttcgtgtgagttttgatg 169  Q
    |||| ||||||| |||||||||||||||| ||| | || ||| ||||| |||| ||||||| | ||||||| ||||| ||||||    | ||||||||||    
T  29827263 ttgtttggaaagaatatagaagaatggaaatctatattagatagatatgaaaggattcctaataaagagatccaaaatatacttaaaataagttttgatg 29827362  T
Q  170 ctttggaggaagatga 185  Q
    ||||||||||||||||    
T  29827363 ctttggaggaagatga 29827378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 28186633 - 28186699
Alignment:
Q  32 ctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaa 98  Q
    |||||||||||||||| || ||| || | ||||||||||||| ||||||| |||||| |||||||||    
T  28186633 ctggccttccattggctttagaagtagtgggttccaacttgtttggaaagaatataggagaatggaa 28186699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 28326717 - 28326780
Alignment:
Q  32 ctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatg 95  Q
    |||||||||||||||| || ||| || | ||||||||||||| ||||||| |||||| ||||||    
T  28326717 ctggccttccattggctttagaagtagtgggttccaacttgtttggaaagaatatagtagaatg 28326780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 28504353 - 28504416
Alignment:
Q  32 ctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatg 95  Q
    |||||||||||||||| || ||| || | ||||||||||||| ||||||| |||||| ||||||    
T  28504353 ctggccttccattggctttagaagtagtgggttccaacttgtttggaaagaatatagtagaatg 28504416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 28296683 - 28296617
Alignment:
Q  32 ctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaa 98  Q
    |||||||||||||||| || ||| || | ||||||||||||| ||||||| |||||  |||||||||    
T  28296683 ctggccttccattggctttagaagtagtgggttccaacttgtttggaaagaatataagagaatggaa 28296617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 28515390 - 28515456
Alignment:
Q  32 ctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaa 98  Q
    |||||||||||||||| || ||| || | ||||||||||||| ||||||| |||||  |||||||||    
T  28515390 ctggccttccattggctttagaagtagtgggttccaacttgtttggaaagaatataagagaatggaa 28515456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 32 - 182
Target Start/End: Original strand, 3280898 - 3281048
Alignment:
Q  32 ctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatattaaagaattcctag 131  Q
    |||||||||||||||| || ||| |||||||||||||||||| ||||||| ||||| |||| |||||||||||||||||||||||| |||| |||||||     
T  3280898 ctggccttccattggcattagaagtattaggttccaacttgtttggaaagaatataaaagagtggaattctttgttggatcgatatgaaaggattcctaa 3280997  T
Q  132 tgaagagattcaaaaaatacttcgtgtgagttttgatgctttggaggaaga 182  Q
    | |||||||||| || ||||||   ||||||||||||||||||||||||||    
T  3280998 taaagagattcagaagatacttaaagtgagttttgatgctttggaggaaga 3281048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 32 - 197
Target Start/End: Original strand, 16692106 - 16692271
Alignment:
Q  32 ctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatattaaagaattcctag 131  Q
    ||||||||||||| || || ||| || |||| || ||||||| ||||||| |||||||||||||||| |||   || ||||||||| || | |||||| |    
T  16692106 ctggccttccattagctttagaagtagtaggatctaacttgtttggaaagaatatagaagaatggaaatctacatttgatcgatatgaatggattcctgg 16692205  T
Q  132 tgaagagattcaaaaaatacttcgtgtgagttttgatgctttggaggaagatgagaggagtgtttt 197  Q
    | ||   ||||| |||||||||   || |||||||||  ||||||||||||||| | |||||||||    
T  16692206 taaacgaattcacaaaatacttaaagtaagttttgatagtttggaggaagatgaaaagagtgtttt 16692271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 197
Target Start/End: Complemental strand, 57235 - 57072
Alignment:
Q  34 ggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattctttgttggatcgatattaaagaattcctagtg 133  Q
    ||||||||||||||||| ||| || | ||||| ||||||| ||||||| |||||| ||||||||| |||   ||  |||  ||| |||| ||||| | |     
T  57235 ggccttccattggccttagaagtagtgggttcgaacttgtttggaaagaatataggagaatggaaatctgcattaaatcagtatgaaaggattcccatta 57136  T
Q  134 aagagattcaaaaaatacttcgtgtgagttttgatgctttggaggaagatgagaggagtgtttt 197  Q
    || |||| ||| | ||||||   || || ||||||||||||||||||||||||| || ||||||    
T  57135 aaaagatccaagagatacttaaagtaagctttgatgctttggaggaagatgagaagaatgtttt 57072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 31906421 - 31906458
Alignment:
Q  160 agttttgatgctttggaggaagatgagaggagtgtttt 197  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  31906421 agttttgatgctttggaggaagatgagaaaagtgtttt 31906458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 5089893 - 5089821
Alignment:
Q  32 ctggccttccattggccttggaaatattaggttccaacttgtatggaaagcatatagaagaatggaattcttt 104  Q
    |||||||||||||||| || ||| |  | |||||||| |||| ||||||| |||||||| ||||||| |||||    
T  5089893 ctggccttccattggctttagaagttgtgggttccaatttgtttggaaaggatatagaaaaatggaaatcttt 5089821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University