View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_387 (Length: 216)
Name: NF6866A_low_387
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_387 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 44187453 - 44187662
Alignment:
| Q |
1 |
aataattttctactctaacaccaaactcctcaatcaccccggtagtcaagtctaaacaagctagttcataatttggtgttctgaagaatatattgccctc |
100 |
Q |
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| T |
44187453 |
aataattttctactctaacaccaatctcctcaatcaccccggtagtcaagtctaaacaagctagttcataatttggtgttctgaagaatatattgccctc |
44187552 |
T |
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| Q |
101 |
tttccaagctccgataggatttggaatgcaagccaaaacaggttcagtagaatgttgaatgggaaaaggatcaacattgaagagtctaacccaggattcc |
200 |
Q |
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| T |
44187553 |
tttccaagctccggtaggatttggaatgcaagccaaaaaaggttcagtagaatgttgaatgggaaaaggatcaacattgaagagtctaacccaggattcc |
44187652 |
T |
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| Q |
201 |
ttaacaccaa |
210 |
Q |
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|||||||||| |
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| T |
44187653 |
ttaacaccaa |
44187662 |
T |
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Back To:
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 19163116 - 19163166
Alignment:
| Q |
16 |
taacaccaaactcctcaatcaccccggtagtcaagtctaaacaagctagtt |
66 |
Q |
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||||||||| ||||||||||| ||||||||| || || ||||||||||||| |
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| T |
19163116 |
taacaccaatctcctcaatcatcccggtagttaaatcaaaacaagctagtt |
19163166 |
T |
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