View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_388 (Length: 216)
Name: NF6866A_low_388
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_388 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 21 - 200
Target Start/End: Complemental strand, 52284281 - 52284102
Alignment:
| Q |
21 |
ctatttctgctttcagatgcttcttgaacaatatctgaaattgttctcagccttcctttgttccgaaggtactccccgattggccctccacaattataat |
120 |
Q |
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| T |
52284281 |
ctatttctgctttcagatgcttcttgaacaatatctgaaattgttctcagccttcctttgttccgaaggtactccccgattggccctccacaattataat |
52284182 |
T |
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| Q |
121 |
catctccacgtgcaacccatccataaatgtccgaactggcctgcatgtcctttgaattccagtccttcttcccatgatgt |
200 |
Q |
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| T |
52284181 |
catcttcacgtgcaacccatccataaatgtctgaactggcctgcatgtcctttgaattccagtccttcttcccatgatgt |
52284102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 21 - 200
Target Start/End: Complemental strand, 54791623 - 54791444
Alignment:
| Q |
21 |
ctatttctgctttcagatgcttcttgaacaatatctgaaattgttctcagccttcctttgttccgaaggtactccccgattggccctccacaattataat |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54791623 |
ctatttctgctttcagatgcttcttgaacaatatctgaaactgttctcagccttcctttgttccgaaggtactccccgattggccctccacaattataat |
54791524 |
T |
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| Q |
121 |
catctccacgtgcaacccatccataaatgtccgaactggcctgcatgtcctttgaattccagtccttcttcccatgatgt |
200 |
Q |
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| T |
54791523 |
catcttcacgtgcaacccatccataaatgtctgaactggcctgcatgtcctttgaattccagtccttcttcccatgatgt |
54791444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 30 - 200
Target Start/End: Original strand, 54777532 - 54777702
Alignment:
| Q |
30 |
ctttcagatgcttcttgaacaatatctgaaattgttctcagccttcctttgttccgaaggtactccccgattggccctccacaattataatcatctccac |
129 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
54777532 |
ctttcagatgcttcttgaacaatatccgaaattgttctcagccttcctttgttccgagggtactccccgattggccctccacaattataatcatcttcac |
54777631 |
T |
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| Q |
130 |
gtgcaacccatccataaatgtccgaactggcctgcatgtcctttgaattccagtccttcttcccatgatgt |
200 |
Q |
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| T |
54777632 |
gtgcaacccatccataaatgtctgaactggccagcatgtccattgaattccattccttcttcccatgatgt |
54777702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 799551 - 799385
Alignment:
| Q |
21 |
ctatttctgctttcagatgcttcttgaacaatatctgaaattgttctcagccttcctttgttccgaaggtactccccgattggccctccacaattataat |
120 |
Q |
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||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| || |||| ||||||||||| |
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| T |
799551 |
ctatttctgctttgagatgcttcttgaactatatctgaaattgtcctcagccttcctttgttgcgaaggtactccccaatcaaccctggacaattataat |
799452 |
T |
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| Q |
121 |
catctccacgtgcaacccatccataaatgtccgaactggcctgcatgtcctttgaattccagtcctt |
187 |
Q |
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||||| ||||||||||||| || ||||| || |||||| |||||| |||| | |||||||| ||||| |
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| T |
799451 |
catcttcacgtgcaacccaaccgtaaatctctgaactgtcctgcaagtccatggaattccaatcctt |
799385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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