View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6866A_low_391 (Length: 214)
Name: NF6866A_low_391
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_391 |
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| [»] chr1 (4 HSPs) |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 7386613 - 7386418
Alignment:
| Q |
19 |
ctaagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcaaagataattggctttggaattgagtagtt |
118 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7386613 |
ctaagagcatacacatcgcccatccatatgggtggtatcacactaaccaatgctcttgtgtcataatatcatggataattggctttggaattgagtagtt |
7386514 |
T |
|
| Q |
119 |
aaactatacatggtagcaatgcattactacgttccttttccagtaattgttagattttgtaatactttgagttttatttcttttaattaatagtat |
214 |
Q |
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||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7386513 |
aaattatacatggtagcaatgcattactacgttccttttcctgtaattgtcagattttgtaatactttgagttttatttcttttaattaatagtat |
7386418 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 42 - 178
Target Start/End: Original strand, 19991215 - 19991350
Alignment:
| Q |
42 |
ccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcaaagataattggctttggaattgagtagttaaactatacatggtagcaatgca |
141 |
Q |
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||||||||||||||||||||| |||||||| | ||||||||| |||| |||||||||| ||| ||||||||||||||||||| ||||||| |||| | |
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| T |
19991215 |
ccatatgggtggtatcacactgcccaatgcttttgtgtcataagatcatggataattggcattgaaattgagtagttaaactatccatggtaataatgga |
19991314 |
T |
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| Q |
142 |
ttactacgttccttttccagtaattgttagattttgt |
178 |
Q |
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||||||| |||||||||| | ||||||| |||||||| |
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| T |
19991315 |
ttactaccttccttttcctgcaattgtt-gattttgt |
19991350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 19322649 - 19322733
Alignment:
| Q |
41 |
tccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcaaagataattggctttggaattgagtagttaaactat |
125 |
Q |
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|||||||||||||||| ||| ||||||| | ||| |||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
19322649 |
tccatatgggtggtattacaataaccaacgttcttgtgtcataatatcatgaataattggctttagaattgagtagttaaactat |
19322733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 214
Target Start/End: Original strand, 19322751 - 19322781
Alignment:
| Q |
184 |
tttgagttttatttcttttaattaatagtat |
214 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
19322751 |
tttgagttttatttcttttaattaatagtat |
19322781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 119; Significance: 6e-61; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 4925404 - 4925203
Alignment:
| Q |
18 |
actaagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcaaagataattggctttggaattgagtagt |
117 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
4925404 |
actaagagcatacgcatcgtctgtccatatgggtggtatcacactaaccaatgctcttgtgtcataatatcatggataattggctttggaattgagtagt |
4925305 |
T |
|
| Q |
118 |
taaactatacatggtagcaatgcattactacgttccttttccagtaattgttagattttgt-----------aatactttgagttttatttcttttaatt |
206 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||| |||||||||||||||| | |||||||||||| ||||||||||||||| |
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| T |
4925304 |
taaactatacatggtaacaatgcattactacgttcct------gtaattgttagattttatacatattttagaatactttgagtattatttcttttaatt |
4925211 |
T |
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| Q |
207 |
aatagtat |
214 |
Q |
| |
|
|||||||| |
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|
| T |
4925210 |
aatagtat |
4925203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 18 - 178
Target Start/End: Complemental strand, 35205947 - 35205787
Alignment:
| Q |
18 |
actaagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcaaagataattggctttggaattgagtagt |
117 |
Q |
| |
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||||||||||| ||||||| ||| |||||||||||||||||| || |||||||| | ||||||||| |||| ||||||||| ||| |||||||| || |
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| T |
35205947 |
actaagagcatgcacatcgcctgcacatatgggtggtatcacattacccaatgcttttgtgtcataagatcatgaataattggcattgaaattgagtggt |
35205848 |
T |
|
| Q |
118 |
taaactatacatggtagcaatgcattactacgttccttttccagtaattgttagattttgt |
178 |
Q |
| |
|
|||||||| ||||| || ||||||||||| | |||||||||| | |||||| |||||||| |
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|
| T |
35205847 |
taaactatccatggaagtaatgcattactgccttccttttcctgcaattgtctgattttgt |
35205787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 35211203 - 35211344
Alignment:
| Q |
18 |
actaagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcaaagataattggctttggaattgagtagt |
117 |
Q |
| |
|
||||||||||| |||||| ||| |||||||||||||||||| || |||||||| | ||||||||| |||| ||||||||| ||| |||||||| || |
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| T |
35211203 |
actaagagcatgcacatcacctgcacatatgggtggtatcacattacccaatgcttttgtgtcataagatcatgaataattggcattgaaattgagtggt |
35211302 |
T |
|
| Q |
118 |
taaactatacatggtagcaatgcattactacgttccttttcc |
159 |
Q |
| |
|
|||||||| |||||||| ||||||||||| | |||||||||| |
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| T |
35211303 |
taaactatccatggtagtaatgcattactgccttccttttcc |
35211344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 2e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 20 - 178
Target Start/End: Complemental strand, 52314651 - 52314493
Alignment:
| Q |
20 |
taagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcaaagataattggctttggaattgagtagtta |
119 |
Q |
| |
|
||||||||| ||||||| ||| |||||||||||||||||| | |||||||| | ||||||||| |||| ||||||||| ||| ||||||||||||| |
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|
| T |
52314651 |
taagagcatgcacatcgcctgcacatatgggtggtatcacattgcccaatgcttttgtgtcataagatcatgaataattggcattgaaattgagtagtta |
52314552 |
T |
|
| Q |
120 |
aactatacatggtagcaatgcattactacgttccttttccagtaattgttagattttgt |
178 |
Q |
| |
|
|||||| |||||||| ||||||||||||| |||||||||| | |||||| |||||||| |
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|
| T |
52314551 |
aactatccatggtagtaatgcattactaccttccttttcctgcaattgtctgattttgt |
52314493 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 22 - 178
Target Start/End: Complemental strand, 53465059 - 53464903
Alignment:
| Q |
22 |
agagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcaaagataattggctttggaattgagtagttaaa |
121 |
Q |
| |
|
||||||| ||||||| ||| |||||||||||||||||| | |||||||| | ||||||||| |||| ||||||||| ||| ||||||||||||||| |
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|
| T |
53465059 |
agagcatgcacatcgcctgcacatatgggtggtatcacattgcccaatgcttttgtgtcataagatcatgaataattggcattgaaattgagtagttaaa |
53464960 |
T |
|
| Q |
122 |
ctatacatggtagcaatgcattactacgttccttttccagtaattgttagattttgt |
178 |
Q |
| |
|
|||| |||||||| ||||||||||||| |||||||||| | |||||| |||||||| |
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|
| T |
53464959 |
ctatccatggtagtaatgcattactaccttccttttcctgcaattgtctgattttgt |
53464903 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 23563714 - 23563558
Alignment:
| Q |
19 |
ctaagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcaaagataattggctttggaattgagtagtt |
118 |
Q |
| |
|
|||||||||| ||||||| ||| ||||||||||||||||||| |||||||| | ||||||||| |||| |||||||| | ||| |||||||||||| |
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|
| T |
23563714 |
ctaagagcatgcacatcggctgcatatatgggtggtatcacactgcccaatgcttttgtgtcataagatcatggataattgacattgaaattgagtagtt |
23563615 |
T |
|
| Q |
119 |
aaactatacatggtagcaatgcattactacgttccttttccagtaattgttagattt |
175 |
Q |
| |
|
||||||| |||||| | ||||||||||||| |||||||||| | |||||| |||||| |
|
|
| T |
23563614 |
aaactatccatggtggtaatgcattactaccttccttttcctgcaattgtcagattt |
23563558 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 48265415 - 48265287
Alignment:
| Q |
19 |
ctaagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcaaagataattggctttggaattgagtagtt |
118 |
Q |
| |
|
|||||| ||| ||||||| ||| |||||||||||||||||||| |||||||| | ||||||||| |||| |||||||||| ||| |||||||||||| |
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| T |
48265415 |
ctaagaacatgcacatcgcctgcacatatgggtggtatcacactgtccaatgcttttgtgtcataagatcatggataattggcattgaaattgagtagtt |
48265316 |
T |
|
| Q |
119 |
aaactatacatggtagcaatgcattacta |
147 |
Q |
| |
|
||||||| |||||||| |||||||||||| |
|
|
| T |
48265315 |
aaactatccatggtagtaatgcattacta |
48265287 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 39375508 - 39375604
Alignment:
| Q |
17 |
cactaagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcaaagataattggctttggaattgag |
113 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||| |||||||||| |||| |||||||||||||| |||||||||||||||||||||| |
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|
| T |
39375508 |
cactaagagcatacacattgcctgtccatatgggtggtatcatactaaccaatactcttgtgtcataatatcatggataattggctttggaattgag |
39375604 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 172 - 210
Target Start/End: Original strand, 39375627 - 39375665
Alignment:
| Q |
172 |
attttgtaatactttgagttttatttcttttaattaata |
210 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39375627 |
attttgtaatactttaagttttatttcttttaattaata |
39375665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 40278487 - 40278604
Alignment:
| Q |
17 |
cactaagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcaaagataattggctttggaattgagtag |
116 |
Q |
| |
|
|||| ||||||||||||||| ||| |||||||||||||||||||| |||||||| | ||||||||| |||| |||||||| | ||| |||||||||| |
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|
| T |
40278487 |
cacttagagcatacacatcgcctgcacatatgggtggtatcacactggccaatgcttttgtgtcataaaatcatggataattgacattgaaattgagtag |
40278586 |
T |
|
| Q |
117 |
ttaaactatacatggtag |
134 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
40278587 |
ttaaactatccatggtag |
40278604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 45888944 - 45888823
Alignment:
| Q |
20 |
taagagcatacacatcgtctgtccatatgggtggtatcacactaaccaatgctctcgtgtcataatatcaaagataattggctttggaattgagtagtta |
119 |
Q |
| |
|
||||||||||||||||||| ||| | || ||||||| ||| ||||||||||| | |||||||| || | |||||||||| ||||| ||||||| || |
|
|
| T |
45888944 |
taagagcatacacatcgtcggtcaaaataggtggtaatacattaaccaatgcttttgtgtcatagtaacttggataattggcattggatatgagtagcta |
45888845 |
T |
|
| Q |
120 |
aactatacatggtagcaatgca |
141 |
Q |
| |
|
|| ||| ||| || |||||||| |
|
|
| T |
45888844 |
aattatccatagttgcaatgca |
45888823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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