View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_398 (Length: 211)
Name: NF6866A_low_398
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_398 |
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Alignment Details
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 17167523 - 17167634
Alignment:
| Q |
18 |
aatatggactaaaactacttaaaagaaatcatttggaggacaaatagtaagattttgtttttataaggaaaaacaaaatttgactattttgtagtgactt |
117 |
Q |
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| T |
17167523 |
aatatggactaaaactacttaaaagaaaacatttggaggacaaattgtaagattttgtttttataacggaaaaaaaaattagactattttgtagtgactt |
17167622 |
T |
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| Q |
118 |
aaacatatcaaa |
129 |
Q |
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| T |
17167623 |
aaacatatcaaa |
17167634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 17173100 - 17173211
Alignment:
| Q |
18 |
aatatggactaaaactacttaaaagaaatcatttggaggacaaatagtaagattttgtttttataaggaaaaacaaaatttgactattttgtagtgactt |
117 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| | |||| |||||| ||||||||||||||||||| |
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| T |
17173100 |
aatatggactaaaactacttaaaagaaaacatttggaggacaaattgtaagattttgtttttataacggaaaaaaaaattagactattttgtagtgactt |
17173199 |
T |
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| Q |
118 |
aaacatatcaaa |
129 |
Q |
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| T |
17173200 |
aaacatatcaaa |
17173211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 17251652 - 17251590
Alignment:
| Q |
18 |
aatatggactaaaactacttaaaagaaatcatttggaggacaaatagtaagattttgttttta |
80 |
Q |
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| T |
17251652 |
aatatggactaaaactacttaaaagaaatcatttggaggacaaatagtaagattttgttttta |
17251590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 17251245 - 17251188
Alignment:
| Q |
72 |
ttgtttttataaggaaaaacaaaatttgactattttgtagtgacttaaacatatcaaa |
129 |
Q |
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| T |
17251245 |
ttgtttttataagcaaaaacaaaatttgactattttgtagtgacttaaacatatcaaa |
17251188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 17250506 - 17250438
Alignment:
| Q |
124 |
atcaaatgtttttatattttgagggacaattgacttatttaacctttttattaataatatgtagagcat |
192 |
Q |
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||||||||||| ||||||| || |||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
17250506 |
atcaaatgtttgtatatttggaaggaccatttacttatttaacctttttattaataatatgtagagcat |
17250438 |
T |
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