View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_40 (Length: 415)
Name: NF6866A_low_40
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 6 - 362
Target Start/End: Complemental strand, 32060459 - 32060103
Alignment:
| Q |
6 |
tgagatgaacacaaaggtcagaacaaatttgtacccatatcatatatagatcttacatccttagtcttcaatccatcattataaagcaaccaaacaaagc |
105 |
Q |
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| T |
32060459 |
tgagaagaacacaaaggtcagaacgaatttgtacccatatcatatatagatcttacatccttagtcttcaatccatcattataaagcaaccaaacaaagc |
32060360 |
T |
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| Q |
106 |
attttattctttgagcccctcccatttccaaacattattccaagtagagatacatcaatgtgacatatcgtctaactactattgttaggaggaattttga |
205 |
Q |
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| T |
32060359 |
attttattctttgagcccctcccatttccaaacattattccaagtagacatacatcaatgtgacacatcgtctaactactattgttaggaggaattttga |
32060260 |
T |
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| Q |
206 |
tacgcaaatcattagttttgataccattgttgagtcatgaggggagcccaatgaatcatcatgttggactaagagcaaacactcaagtgagtcaaacact |
305 |
Q |
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| T |
32060259 |
tacgcaaatcattagttttgataccattgttgagtcacgaggggagcccagtaaatcatcatgttggaccaagagcaaacactcaagtgagtcaaacact |
32060160 |
T |
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| Q |
306 |
aaatctttatttaaaattttaatacattagatatatcaatcttctcatttatgtgtt |
362 |
Q |
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| T |
32060159 |
agatctttatttaaaattttaatacattagatatatcaatcttctcatttatatgtt |
32060103 |
T |
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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 70 - 154
Target Start/End: Complemental strand, 37258096 - 37258011
Alignment:
| Q |
70 |
tcttcaatccatcattataaagcaaccaaacaaagcattttattctttga-gcccctcccatttccaaacattattccaagtagag |
154 |
Q |
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| T |
37258096 |
tcttcaatccataattgtaaagcagccaaagaaagcattttattttttgaggctcctctcattttcaaacattattccaggtagag |
37258011 |
T |
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