View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_402 (Length: 209)
Name: NF6866A_low_402
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_402 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 30878002 - 30877827
Alignment:
| Q |
15 |
gttcactgacactgtcattttcatcactatcacactccaaaacaactctgacacagaacaaacacctctccttattccattgtttccaaggttgtctcct |
114 |
Q |
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| T |
30878002 |
gttcactgacactgtcattttcatcactatcacactccaaaacaactctgacacagaacaaacacctctccttattccattgtttccaaggttgtctcct |
30877903 |
T |
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| Q |
115 |
gtgtttggtccccacaaacaactctcctttttcatttctcttttcactttgctatggaaatggaaggttatgatat |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30877902 |
gtgtttggtccccacaaacaactctcctttttcatttctcttttcactttgctatggaaatggaaggttatgatat |
30877827 |
T |
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