View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6866A_low_408 (Length: 207)
Name: NF6866A_low_408
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_408 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 38483881 - 38483711
Alignment:
| Q |
20 |
atcattccaaccaacaataatcgccacttgaagaaacaaaatcaacatcacccaaagcctatcaaaactcctaaacaaattccaaaacgacctccgttca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38483881 |
atcattccaaccaacaataatcgccacttgaagaaacaaaatcaacatcacccaaagcctatcaaaactcctaaacaaattccaaaacgacctccgttca |
38483782 |
T |
|
| Q |
120 |
acaaaacctgtcttcccaacacgatttccatcgaaaaaactactcccgataccaataggccatttcaattt |
190 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
38483781 |
acaaaacccgtcttcccaacacgatttccatcgaaaaaactactcccaatatcaataggccatttcaattt |
38483711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 140
Target Start/End: Complemental strand, 30118257 - 30118163
Alignment:
| Q |
46 |
cttgaagaaacaaaatcaacatcacccaaagcctatcaaaactcctaaacaaattccaaaacgacctccgttcaacaaaacctgtcttcccaaca |
140 |
Q |
| |
|
||||||||||||| | |||||| | ||||||||| |||||||||| ||||| |||||||||||| ||| | |||||||| || ||||| |||||| |
|
|
| T |
30118257 |
cttgaagaaacaacaccaacataatccaaagcctgtcaaaactccgaaacagattccaaaacgatctctgctcaacaaatccggtcttaccaaca |
30118163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University