View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6866A_low_411 (Length: 206)

Name: NF6866A_low_411

Description: NF6866A

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF6866A_low_411

[»] chr4 (2 HSPs)

Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 2)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 163; E-Value: 3e-87

Query Start/End: Original strand, 44 - 206

Target Start/End: Complemental strand, 36170700 - 36170538

Alignment:

Q	44	aatatagcaactgatccacaaaaccataactcattaaaatacttacagagctagatgaagtaaaacacaaactttcaatagccctcattgttatttcctt	143	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36170700	aatatagcaactgatccacaaaaccataactcattaaaatacttacagagctagatgaagtaaaacacaaactttcaatagccctcattgttatttcctt	36170601	T

Q	144	tgtttttgaagaatatgaccatttcggatctaaaacacgtaacaaagcacggattccgccttc	206	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36170600	tgtttttgaagaatatgaccatttcggatctaaaacacgtaacaaagcacggattccgccttc	36170538	T

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Target: chr4; HSP #2

Raw Score: 53; E-Value: 1e-21

Query Start/End: Original strand, 44 - 96

Target Start/End: Original strand, 1286342 - 1286394

Alignment:

Q	44	aatatagcaactgatccacaaaaccataactcattaaaatacttacagagcta	96	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	1286342	aatatagcaactgatccacaaaaccataactcattaaaatacttacagagcta	1286394	T

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