View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_418 (Length: 204)
Name: NF6866A_low_418
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_418 |
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Alignment Details
Target: chr1 (Bit Score: 89; Significance: 4e-43; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 28 - 149
Target Start/End: Original strand, 33092442 - 33092559
Alignment:
| Q |
28 |
taggactctcacaaatttcacttgattcttcttttgcttagtgacaagcgagacaatttcttgctccatatatagtcttaagacatgcattcatcaagta |
127 |
Q |
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| T |
33092442 |
taggattctcacaaatttcacttgattcttcttttgcttagtgacaagcgagagaattttttgctc----tatagtcttaagacatgcattcatcaagta |
33092537 |
T |
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| Q |
128 |
gaccttcgacacacaactgaga |
149 |
Q |
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| T |
33092538 |
gacattcgacacacaactgaga |
33092559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 35 - 149
Target Start/End: Original strand, 1182174 - 1182284
Alignment:
| Q |
35 |
ctcacaaatttcacttgattcttcttttgcttagtgacaagcgagacaatttcttgctccatatatagtcttaagacatgcattcatcaagtagaccttc |
134 |
Q |
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| T |
1182174 |
ctcacaaatttcacttgattcgtcttttgcttagtgaaaagtgagacaattttttgctccata----gtcttaagacatgcattcatcaagtagaccttc |
1182269 |
T |
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| Q |
135 |
gacacacaactgaga |
149 |
Q |
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| T |
1182270 |
gacacacaactgaga |
1182284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 147 - 193
Target Start/End: Original strand, 33092602 - 33092648
Alignment:
| Q |
147 |
agaatgttcacatcatcatattattggatctcaaagcaaaatctaac |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33092602 |
agaatgttcacatcatcatattattggatctcaaagcaaaatctaac |
33092648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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