View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_48 (Length: 403)
Name: NF6866A_low_48
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 157 - 382
Target Start/End: Original strand, 20368218 - 20368443
Alignment:
| Q |
157 |
taaatcatgatcattctttgcagaagaagagtttgttggaggttggaaacaaaggaagggagtgtgttacttgtggccctaacaagtcttttgaagattt |
256 |
Q |
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| T |
20368218 |
taaatcatgatcattctttgcagaagaagagtttgttggaggttggaaacaaaagaagggagtgtgttacttgtggcccaaacaagtcttttgaagattt |
20368317 |
T |
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| Q |
257 |
ttcagatatttacgctctcattatgaaaacttataactcatataatgttaatttacgttttgatcatttgggattnnnnnnnctttgtgtcccttaatgt |
356 |
Q |
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| T |
20368318 |
ttcagatatttacgccctcattatgaaaacttataactcatataatgttaatttacgttttgatcatttgggattaaaaaaactttgtgtcccttaatgt |
20368417 |
T |
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| Q |
357 |
gctggaatcactcaaaggcttatcat |
382 |
Q |
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| T |
20368418 |
gttggaatcacttaaaggcttatcat |
20368443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 331
Target Start/End: Complemental strand, 46956131 - 46956050
Alignment:
| Q |
250 |
aagatttttcagatatttacgctctcattatgaaaacttataactcatataatgttaatttacgttttgatcatttgggatt |
331 |
Q |
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|||||||||||||||| | |||||||||||| | || | |||||| |||||| | |||||||| ||||||||||||||| |
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| T |
46956131 |
aagatttttcagatatacatgctctcattatgcatacgttcaactcagataatgctgatttacgtgctgatcatttgggatt |
46956050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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