View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_50 (Length: 392)
Name: NF6866A_low_50
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_50 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 16 - 392
Target Start/End: Original strand, 52385758 - 52386134
Alignment:
| Q |
16 |
acatcaacagcaacacagcttccgacagatgacaaaacagtcagtgtggtaactctggcgggcgacaacagaggagcaacaatgcatgtggcaggttccc |
115 |
Q |
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| T |
52385758 |
acatcaacagcaacacagcttccgacagatgacaaaacagtcagtgtggtaactctggcgggcgacaacagaggagcaacaatgcatgtggcaggttccc |
52385857 |
T |
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| Q |
116 |
attcccaatcaacaaggaagaaggggtcaatccacaacatacaccgaaccaaagaggaagaagagaaagatgaagcgggaaaggcatatgtgaacagcaa |
215 |
Q |
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| T |
52385858 |
attcccaatcaacaaggaagaaggggtcaatccacaacatacaccgaaccaaagaggaagaagagaaagatgaagcgggaaaggcatatgtgaacagcaa |
52385957 |
T |
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| Q |
216 |
catacagagtatgaataattcattgatggtgcaaggttcaataaatggaagagaccccggcgttcatgtcattcttcccgaaaagcctgagcctcaagtt |
315 |
Q |
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| T |
52385958 |
catacagagtatgaataattcattgatggtgcaaggttcaataaatggaagagaccccggcgttcatgtcattcttcccgaaaagcctgagcctcaagtt |
52386057 |
T |
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| Q |
316 |
aaacaaggtttggaaaaccgcaaagctgaagttaaaacagttagccgggtagagaggttaacttaccaaccaatggt |
392 |
Q |
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| T |
52386058 |
aaacaaggtttggaaaaccgcgaagctgaagttaaaacagttagccgggtagagaggttaacttaccaaccaatggt |
52386134 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 281
Target Start/End: Original strand, 7087813 - 7087895
Alignment:
| Q |
199 |
gcatatgtgaacagcaacatacagagtatgaataattcattgatggtgcaaggttcaataaatggaagagaccccggcgttca |
281 |
Q |
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| T |
7087813 |
gcatatgttaacagcaacatacaaagtatcaataattcactcatgtttcatggttcaatcaatgaaagagaccctggagttca |
7087895 |
T |
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