View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_52 (Length: 388)
Name: NF6866A_low_52
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_52 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 8 - 388
Target Start/End: Complemental strand, 35047025 - 35046645
Alignment:
| Q |
8 |
caatgactaggtggtttgcgaagcgtttcttacatcccgacgtagttgctgagtatgattatattttcctttgggatgaggacctaggagtagaaaactt |
107 |
Q |
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| T |
35047025 |
caatgactaggtggtttgcgaagcgtttcttacatcccgacatagttgctgagtatgattatattttcctttgggatgaggacctaggagtagaaaactt |
35046926 |
T |
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| Q |
108 |
ccaccctgagaagtatgtacaataccattttagttttgcttactcacaatcatataaagtttggttcaattggattttaattttcctaaaacattaagga |
207 |
Q |
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| T |
35046925 |
ccaccctgagaagtatgtacaataccattttagttttgcttaatcacaatcatataaagtttggttcaattggattttaattttcctaaaacattaaaga |
35046826 |
T |
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| Q |
208 |
ttagtgtttgacatttttcctttatgattttaaaggtatgtttctattgtcaaagaagaagggcttgagatatcacaaccagcacttgatcctacaaagt |
307 |
Q |
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| T |
35046825 |
ttagtgtttgacatttttcctttatgattttaaaggtatgtttctattgtcaaagaagaagggcttgagatatcacaaccagcacttgatcctacaaagt |
35046726 |
T |
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| Q |
308 |
cggaagttcatcatcaaattaccgcacgtggtaggaggtcaaaagtgcacaggttatccataatcacatttctctatttga |
388 |
Q |
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| T |
35046725 |
cggaagttcatcatcaaattaccgcacgtggtaggaggtcaaaagtgcacaggttatcaataatcgcatttctctatttga |
35046645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 178; Significance: 6e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 100 - 367
Target Start/End: Original strand, 17682948 - 17683217
Alignment:
| Q |
100 |
gaaaacttccaccctgagaagtatgtacaataccatttt-agttttgcttactcacaatcatataaagtttggttcaattggattttaattttcctaaaa |
198 |
Q |
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| T |
17682948 |
gaaaacttccaccctgagaagtatgta---ttggattttcagttctgcttaatcacaatcatagaaagtttggttctattggattttaatttttcaaaat |
17683044 |
T |
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| Q |
199 |
cattaaggattagtgtttgacatttttcctttatgattttaaaggtatgtttctattgtcaaagaagaagggcttgagat----atcacaaccagcactt |
294 |
Q |
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| T |
17683045 |
cattaaggattagtgtttgacatttttcctttatgattttaaagttatgtctctattgtcaaagaagaagggcttgagatatcgatcacaaccagcactt |
17683144 |
T |
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| Q |
295 |
gatcctacaaagtcggaagttcatcatcaaattaccgcacgtggtaggaggtcaaaagtgcacaggttatcca |
367 |
Q |
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| T |
17683145 |
gatcctaaaaagttggaagttcatcatcaaattaccgcacgtggtaggaggtcaaaagtgcacaggttatcca |
17683217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 133041 - 133100
Alignment:
| Q |
241 |
aggtatgtttctattgtcaaagaagaagggcttgagatatcacaaccagcacttgatcct |
300 |
Q |
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| T |
133041 |
aggtatttatctattgttaaagaagaagggctagagatatcacagcctgcactggatcct |
133100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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