View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_54 (Length: 384)
Name: NF6866A_low_54
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 14 - 372
Target Start/End: Original strand, 51960933 - 51961295
Alignment:
| Q |
14 |
actacactgttgcatgtcaccagaaattgacacttaaacaagaagttgaaggtttttgctcaaagtgaagaatcttcttcggtgtatatgacgaaattat |
113 |
Q |
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| T |
51960933 |
actacactgttgcatgtcaccagaaattgacacttaaacaagaagttgaaggtttttgctcaaagtgaagaatcttcttcggtgtatatgacgaaattat |
51961032 |
T |
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| Q |
114 |
gtgtctaatagatttagactttgagacaaaagagtagaatctgcttccgtgatctaggagaggatggaaagctacacctttaatttaagcagagtctttc |
213 |
Q |
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| T |
51961033 |
gtgtctaatagatttagactttgagacaaaagagtagaatctgcttccgtgatctaggagaggatggaaagctacacctttaatttaaccagagtctttc |
51961132 |
T |
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| Q |
214 |
ttattgacagaaca----acatcgatccttttgtaatgatgtaaatttattactttctcaaggatttggattttgttatttacaactcgagcatagtact |
309 |
Q |
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| T |
51961133 |
ttattgatagagcaacgtacatcgatccttttgtaatgatgtaaatttattactttctcaaggatttggattttcttatttacaactcgagcatagtact |
51961232 |
T |
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| Q |
310 |
atagtgatagagtcacaacattcaaacgtgtgatataacatcattgaacaaccatgcaatatt |
372 |
Q |
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| T |
51961233 |
atagtgatagagtcacaacattcaaacatgtgatataacatcattgaacaaccatgcaatatt |
51961295 |
T |
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